Variant report

Variant	rs7073136
Chromosome Location	chr10:61698103-61698104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61690402..61692449-chr10:61697783..61700491,2	MCF-7	breast:
2	chr10:61697187..61699091-chr10:61700833..61702353,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1008887	0.90[EUR][1000 genomes]
rs10740000	0.85[EUR][1000 genomes]
rs10994030	0.91[CEU][hapmap]
rs10994077	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10994080	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10994081	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10994082	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10994083	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1171847	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16914411	0.94[ASN][1000 genomes]
rs16914415	0.89[ASN][1000 genomes]
rs16914427	0.87[ASN][1000 genomes]
rs1709342	0.91[CEU][hapmap];0.83[TSI][hapmap]
rs1709343	0.91[CEU][hapmap]
rs2034200	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3851249	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4948377	0.85[ASN][1000 genomes]
rs4948378	0.87[ASN][1000 genomes]
rs59486952	0.99[ASN][1000 genomes]
rs60411991	0.88[ASN][1000 genomes]
rs6479670	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6479673	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479675	0.85[CEU][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7069343	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7073392	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs7078533	0.91[CEU][hapmap]
rs7079211	0.88[ASN][1000 genomes]
rs7094419	0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7097246	0.84[CHB][hapmap]
rs72811557	0.92[ASN][1000 genomes]
rs72811562	0.99[ASN][1000 genomes]
rs72816432	0.95[ASN][1000 genomes]
rs7893603	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7897677	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7899008	0.88[ASN][1000 genomes]
rs7902735	0.88[ASN][1000 genomes]
rs7912514	0.96[ASN][1000 genomes]
rs7914022	0.84[CHB][hapmap]
rs7920049	0.91[CEU][hapmap]
rs9888053	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7073136	EGR2	cis	parietal	SCAN
rs7073136	CCDC6	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61696600-61698200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr10:61696600-61698200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:61697600-61698200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr10:61697600-61698200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:61697800-61698200	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links