Variant report

Variant	rs2034200
Chromosome Location	chr10:61705098-61705099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61695241..61697293-chr10:61702502..61705874,3	MCF-7	breast:
2	chr10:61665357..61667924-chr10:61701547..61705798,5	MCF-7	breast:
3	chr10:61703836..61706924-chr10:61718320..61719980,3	MCF-7	breast:
4	chr10:61703565..61709814-chr10:61724833..61727412,7	MCF-7	breast:
5	chr10:61665632..61668478-chr10:61702558..61705460,3	MCF-7	breast:
6	chr10:61702627..61705197-chr10:61707163..61708770,2	MCF-7	breast:
7	chr10:61702957..61706196-chr10:61723593..61729124,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235931	Chromatin interaction
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1008887	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10740000	0.94[EUR][1000 genomes]
rs10994077	0.98[ASN][1000 genomes]
rs10994080	0.99[ASN][1000 genomes]
rs10994081	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994082	0.99[ASN][1000 genomes]
rs10994083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171847	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914411	0.97[ASN][1000 genomes]
rs16914415	0.91[ASN][1000 genomes]
rs16914427	0.90[ASN][1000 genomes]
rs3851249	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4948377	0.83[ASN][1000 genomes]
rs4948378	0.85[ASN][1000 genomes]
rs59486952	0.96[ASN][1000 genomes]
rs60411991	0.85[ASN][1000 genomes]
rs6479670	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479675	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7069343	0.96[ASN][1000 genomes]
rs7073136	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073392	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7079211	0.85[ASN][1000 genomes]
rs7094419	0.86[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7097246	0.84[CHB][hapmap]
rs72811557	0.90[ASN][1000 genomes]
rs72811562	0.96[ASN][1000 genomes]
rs72816432	0.98[ASN][1000 genomes]
rs7893603	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7897677	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899008	0.85[ASN][1000 genomes]
rs7902735	0.85[ASN][1000 genomes]
rs7912514	0.99[ASN][1000 genomes]
rs7914022	0.84[CHB][hapmap]
rs9888053	0.96[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61704200-61705600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:61704400-61705400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:61704600-61705600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:61704800-61706600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr10:61705000-61705800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:61705000-61706600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:61705000-61706600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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