Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61665357..61667924-chr10:61701547..61705798,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1008887	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10740000	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10994030	0.84[TSI][hapmap]
rs10994081	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10994083	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1171847	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1171849	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1184593	0.81[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1664275	0.88[ASN][1000 genomes]
rs1684913	0.82[ASN][1000 genomes]
rs1709342	0.88[TSI][hapmap]
rs2034200	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3099370	0.88[ASN][1000 genomes]
rs3099371	0.88[ASN][1000 genomes]
rs3851249	0.81[MEX][hapmap]
rs3910925	0.81[CHD][hapmap]
rs6479670	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479673	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7073136	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7893603	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7897677	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6479675	EGR2	cis	parietal	SCAN
rs6479675	CCDC6	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61702000-61702800	Enhancers	Duodenum Mucosa	Duodenum
2	chr10:61702000-61702800	Enhancers	Fetal Intestine Large	intestine

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