Variant report

Variant	rs7893603
Chromosome Location	chr10:61696916-61696917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1008887	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10740000	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10994081	0.99[EUR][1000 genomes]
rs10994083	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1171847	1.00[EUR][1000 genomes]
rs1171849	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1184593	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs1664275	0.90[ASN][1000 genomes]
rs1684913	0.84[ASN][1000 genomes]
rs2034200	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3099370	0.90[ASN][1000 genomes]
rs3099371	0.90[ASN][1000 genomes]
rs6479670	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479673	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479675	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073136	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7897677	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61696600-61698200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr10:61696600-61698200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:61696800-61697200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:61696800-61697600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:61696800-61698000	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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