Variant report

Variant	rs3851249
Chromosome Location	chr10:61704458-61704459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61695241..61697293-chr10:61702502..61705874,3	MCF-7	breast:
2	chr10:61665357..61667924-chr10:61701547..61705798,5	MCF-7	breast:
3	chr10:61703836..61706924-chr10:61718320..61719980,3	MCF-7	breast:
4	chr10:61703565..61709814-chr10:61724833..61727412,7	MCF-7	breast:
5	chr10:61665632..61668478-chr10:61702558..61705460,3	MCF-7	breast:
6	chr10:61702627..61705197-chr10:61707163..61708770,2	MCF-7	breast:
7	chr10:61702957..61706196-chr10:61723593..61729124,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235931	Chromatin interaction
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10994021	0.87[CEU][hapmap]
rs10994022	0.85[CEU][hapmap]
rs10994026	0.87[CEU][hapmap]
rs10994027	0.87[CEU][hapmap]
rs10994031	0.87[CEU][hapmap]
rs10994077	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994080	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994081	0.99[ASN][1000 genomes]
rs10994082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1149660	0.87[CEU][hapmap];0.89[TSI][hapmap]
rs1171847	0.99[ASN][1000 genomes]
rs11815103	0.87[CEU][hapmap]
rs12414629	0.81[EUR][1000 genomes]
rs16914297	0.94[TSI][hapmap]
rs16914411	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16914415	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16914427	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034200	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2271562	0.85[CEU][hapmap]
rs2440926	0.87[CEU][hapmap]
rs3793867	0.94[EUR][1000 genomes]
rs3793870	0.94[EUR][1000 genomes]
rs3793878	0.87[CEU][hapmap]
rs4948377	0.84[ASN][1000 genomes]
rs4948378	0.86[ASN][1000 genomes]
rs59486952	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60411991	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479653	0.87[CEU][hapmap];0.83[TSI][hapmap]
rs6479673	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.99[ASN][1000 genomes]
rs6479675	0.81[MEX][hapmap]
rs7069343	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073136	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7073392	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7079211	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7088755	0.87[CEU][hapmap]
rs7092259	0.87[CEU][hapmap]
rs7094419	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7097246	0.84[CHB][hapmap]
rs72811557	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72811562	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72816432	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7895724	0.87[CEU][hapmap]
rs7897677	0.95[ASN][1000 genomes]
rs7899008	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7902735	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7910256	0.87[CEU][hapmap];0.83[TSI][hapmap]
rs7912514	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914022	0.84[CHB][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs9888053	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61704200-61704600	Bivalent Enhancer	K562	blood
2	chr10:61704200-61705600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:61704400-61704600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:61704400-61705000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:61704400-61705400	Weak transcription	H1 Cell Line	embryonic stem cell

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