Variant report

Variant	rs9888053
Chromosome Location	chr10:61691618-61691619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61664522..61667301-chr10:61690814..61693873,3	MCF-7	breast:
2	chr10:61690402..61692449-chr10:61697783..61700491,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10994077	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10994080	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10994081	0.96[ASN][1000 genomes]
rs10994082	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10994083	0.96[ASN][1000 genomes]
rs1171847	0.96[ASN][1000 genomes]
rs12414601	0.92[EUR][1000 genomes]
rs12414629	0.96[EUR][1000 genomes]
rs16914411	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16914415	0.90[ASN][1000 genomes]
rs16914427	0.88[ASN][1000 genomes]
rs2034200	0.96[ASN][1000 genomes]
rs3793867	0.84[EUR][1000 genomes]
rs3793870	0.84[EUR][1000 genomes]
rs3851249	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948377	0.86[ASN][1000 genomes]
rs4948378	0.88[ASN][1000 genomes]
rs59486952	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60411991	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6479673	0.96[ASN][1000 genomes]
rs7069343	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073136	0.99[ASN][1000 genomes]
rs7073392	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7079211	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7094419	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72811557	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72811562	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816432	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7897677	0.92[ASN][1000 genomes]
rs7899008	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7902735	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7912514	0.97[ASN][1000 genomes]
rs7914022	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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