Variant report

Variant	rs72816432
Chromosome Location	chr10:61706206-61706207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61705595..61707612-chr10:61710517..61712531,2	MCF-7	breast:
2	chr10:61703836..61706924-chr10:61718320..61719980,3	MCF-7	breast:
3	chr10:61703565..61709814-chr10:61724833..61727412,7	MCF-7	breast:
4	chr10:61665009..61667675-chr10:61705578..61707286,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction
ENSG00000235931	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10994077	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10994080	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994081	0.98[ASN][1000 genomes]
rs10994082	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994083	0.98[ASN][1000 genomes]
rs1171847	0.98[ASN][1000 genomes]
rs12414629	0.81[EUR][1000 genomes]
rs16914411	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16914415	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16914427	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2034200	0.98[ASN][1000 genomes]
rs3793867	0.94[EUR][1000 genomes]
rs3793870	0.94[EUR][1000 genomes]
rs3851249	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948377	0.83[ASN][1000 genomes]
rs4948378	0.85[ASN][1000 genomes]
rs59486952	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60411991	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479673	0.98[ASN][1000 genomes]
rs7069343	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7073136	0.95[ASN][1000 genomes]
rs7073392	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7079211	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7094419	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72811557	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72811562	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72816440	0.81[AMR][1000 genomes]
rs7897677	0.94[ASN][1000 genomes]
rs7899008	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7902735	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7912514	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7914022	0.81[EUR][1000 genomes]
rs9888053	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61704800-61706600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr10:61705000-61706600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr10:61705000-61706600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:61705200-61706400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr10:61705200-61706800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:61705200-61706800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:61705200-61706800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:61705400-61706600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:61705600-61706600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:61705600-61706600	Weak transcription	K562	blood
11	chr10:61705600-61706800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:61706200-61706400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links