Variant report

Variant	rs3793870
Chromosome Location	chr10:61659522-61659523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61645422..61647388-chr10:61657593..61660192,2	K562	blood:
2	chr10:61654182..61656949-chr10:61658544..61661969,6	MCF-7	breast:
3	chr10:61655581..61657205-chr10:61658249..61660092,2	K562	blood:
4	chr10:61631763..61634620-chr10:61659289..61660920,2	MCF-7	breast:
5	chr10:61646248..61649681-chr10:61659057..61661794,4	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10994077	0.94[EUR][1000 genomes]
rs10994080	0.94[EUR][1000 genomes]
rs10994082	0.94[EUR][1000 genomes]
rs12414601	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12414629	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16914411	0.91[EUR][1000 genomes]
rs16914415	0.90[EUR][1000 genomes]
rs16914427	0.90[EUR][1000 genomes]
rs3793867	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3851249	0.94[EUR][1000 genomes]
rs59486952	0.97[EUR][1000 genomes]
rs60411991	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7069343	0.94[EUR][1000 genomes]
rs7073392	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7079211	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7094419	0.91[EUR][1000 genomes]
rs72811557	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72811562	0.85[EUR][1000 genomes]
rs72816432	0.94[EUR][1000 genomes]
rs7899008	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7902735	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7912514	0.90[EUR][1000 genomes]
rs7914022	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9888053	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61641600-61664200	Weak transcription	A549	lung
2	chr10:61649800-61664200	Weak transcription	Placenta	Placenta
3	chr10:61650000-61659600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:61650000-61659800	Weak transcription	Thymus	Thymus
5	chr10:61650200-61664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:61650200-61664200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:61650400-61659600	Weak transcription	Dnd41	blood
8	chr10:61651200-61662000	Enhancers	Stomach Mucosa	stomach
9	chr10:61651200-61663400	Enhancers	Colon Smooth Muscle	Colon
10	chr10:61651400-61664000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:61651800-61662000	Enhancers	Rectal Smooth Muscle	rectum
12	chr10:61653400-61660000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:61653400-61660600	Enhancers	Fetal Intestine Small	intestine
14	chr10:61653400-61661800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr10:61653400-61663800	Enhancers	Fetal Intestine Large	intestine
16	chr10:61653800-61659800	Enhancers	Fetal Heart	heart
17	chr10:61653800-61661800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr10:61654200-61659600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:61654200-61663200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:61654400-61661400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:61654400-61663400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:61654800-61659800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:61654800-61663400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:61654800-61663800	Weak transcription	HSMM	muscle
25	chr10:61654800-61664000	Weak transcription	NHLF	lung
26	chr10:61655400-61659600	Weak transcription	Adipose Nuclei	Adipose
27	chr10:61655600-61663800	Weak transcription	Osteobl	bone
28	chr10:61655800-61659600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr10:61656000-61663800	Weak transcription	NH-A	brain
30	chr10:61656200-61659800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:61656200-61659800	Weak transcription	Fetal Stomach	stomach
32	chr10:61656200-61660000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr10:61656200-61661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:61656200-61661400	Weak transcription	Colonic Mucosa	Colon
35	chr10:61656200-61661600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:61656200-61663000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:61656200-61664000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:61656200-61664200	Weak transcription	Right Ventricle	heart
39	chr10:61656400-61661400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:61656400-61662800	Weak transcription	Brain Substantia Nigra	brain
41	chr10:61656400-61663200	Weak transcription	Brain Angular Gyrus	brain
42	chr10:61656800-61661400	Weak transcription	HepG2	liver
43	chr10:61657400-61660800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr10:61657600-61659800	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr10:61657600-61659800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr10:61657600-61659800	Enhancers	Brain Anterior Caudate	brain
47	chr10:61657600-61660400	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr10:61657600-61661000	Enhancers	H1 Cell Line	embryonic stem cell
49	chr10:61657600-61661800	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr10:61657600-61662000	Enhancers	Pancreas	Pancrea

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