Variant report

Variant	rs7073392
Chromosome Location	chr10:61669947-61669948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:61669507-61669954	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:61667421..61670860-chr10:61671929..61674509,5	K562	blood:
2	chr10:61669028..61671045-chr10:61674593..61676546,3	MCF-7	breast:
3	chr10:61664893..61667897-chr10:61669592..61671860,3	K562	blood:

Variant related genes	Relation type
CCDC6	TF binding region
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10994077	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10994080	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10994081	0.84[ASN][1000 genomes]
rs10994082	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10994083	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1171847	0.84[ASN][1000 genomes]
rs12414601	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12414629	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16914297	0.89[CEU][hapmap]
rs16914411	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2034200	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs3793867	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3793870	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3851249	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59486952	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60411991	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479673	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7069343	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7073136	0.87[ASN][1000 genomes]
rs7079211	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094419	0.86[CHB][hapmap];0.84[JPT][hapmap];0.80[EUR][1000 genomes]
rs7097246	0.84[CHB][hapmap]
rs72811557	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72811562	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72816432	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7897677	0.81[ASN][1000 genomes]
rs7899008	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902735	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7912514	0.85[ASN][1000 genomes]
rs7914022	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9888053	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61668400-61671000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:61668600-61670200	Weak transcription	Fetal Stomach	stomach
3	chr10:61668600-61670200	Enhancers	NHEK	skin
4	chr10:61668600-61670400	Enhancers	K562	blood
5	chr10:61668600-61671200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:61668600-61671200	Enhancers	Colon Smooth Muscle	Colon
7	chr10:61668800-61671000	Weak transcription	Fetal Lung	lung
8	chr10:61669000-61670800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:61669000-61670800	Weak transcription	Osteobl	bone
10	chr10:61669000-61673800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:61669800-61670800	Weak transcription	Stomach Smooth Muscle	stomach

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