Variant report

Variant	rs1709343
Chromosome Location	chr10:61614283-61614284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61612117..61617926-chr10:61664918..61668274,7	MCF-7	breast:
2	chr10:61596064..61599024-chr10:61613612..61615480,2	MCF-7	breast:
3	chr10:61613806..61616077-chr10:61621477..61625736,3	MCF-7	breast:
4	chr10:61612125..61614506-chr10:61653727..61655792,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10458645	0.81[JPT][hapmap]
rs10821604	0.82[JPT][hapmap]
rs10821607	0.81[JPT][hapmap]
rs10994021	0.86[CHB][hapmap]
rs10994022	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs10994026	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10994027	0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10994030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10994031	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10994051	0.83[ASN][1000 genomes]
rs1149660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1149661	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149662	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149663	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11815103	0.85[CHB][hapmap];0.84[AMR][1000 genomes]
rs12244844	0.93[ASN][1000 genomes]
rs12252428	0.94[ASN][1000 genomes]
rs1621496	0.85[JPT][hapmap]
rs1664256	0.84[JPT][hapmap]
rs1664284	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1664285	0.90[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1684929	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16914233	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1709342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1709345	0.84[JPT][hapmap]
rs1871637	0.85[JPT][hapmap]
rs1871638	0.85[JPT][hapmap]
rs2120989	0.86[JPT][hapmap]
rs2120990	0.86[JPT][hapmap]
rs2271562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2440926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2458661	0.85[JPT][hapmap]
rs2458663	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2458664	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3106569	0.85[ASN][1000 genomes]
rs3793878	0.90[JPT][hapmap]
rs3844161	0.85[JPT][hapmap]
rs3851247	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs3851248	0.84[ASN][1000 genomes]
rs3862860	0.83[ASN][1000 genomes]
rs3862861	0.84[ASN][1000 genomes]
rs3999569	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs3999570	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4948372	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4948373	0.84[ASN][1000 genomes]
rs4948374	0.81[JPT][hapmap]
rs4948375	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs55706286	0.93[ASN][1000 genomes]
rs55842846	0.83[ASN][1000 genomes]
rs57032269	0.91[ASN][1000 genomes]
rs57348988	0.94[ASN][1000 genomes]
rs61848702	0.85[ASN][1000 genomes]
rs6479653	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs6479654	0.82[JPT][hapmap]
rs6479658	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6479661	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs6479662	0.84[ASN][1000 genomes]
rs7068104	0.83[ASN][1000 genomes]
rs7068247	0.84[ASN][1000 genomes]
rs7070800	0.81[ASN][1000 genomes]
rs7074685	0.84[ASN][1000 genomes]
rs7078533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079228	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs7079588	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs7080447	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7088755	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7088808	0.83[ASN][1000 genomes]
rs7088886	0.81[JPT][hapmap]
rs7092259	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs72817923	0.93[ASN][1000 genomes]
rs7895724	0.86[CHB][hapmap]
rs7908517	0.81[JPT][hapmap]
rs7910256	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7920049	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7920403	0.85[JPT][hapmap];0.84[YRI][hapmap];0.85[ASN][1000 genomes]
rs9664183	0.86[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
3	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
4	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
9	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:61589400-61616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:61591800-61624000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:61592600-61616600	Weak transcription	NH-A	brain
13	chr10:61593200-61629400	Weak transcription	Lung	lung
14	chr10:61595800-61624000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:61598800-61614400	Weak transcription	Fetal Brain Female	brain
16	chr10:61600000-61616400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:61603800-61618400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:61605400-61618400	Weak transcription	Fetal Heart	heart
19	chr10:61606200-61616200	Weak transcription	NHDF-Ad	bronchial
20	chr10:61608000-61615000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:61608000-61615600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:61608000-61617800	Weak transcription	Pancreas	Pancrea
23	chr10:61608000-61618200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:61608000-61624000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:61608000-61624200	Weak transcription	Right Ventricle	heart
26	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:61609200-61616200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:61609200-61617800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:61609400-61615600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:61609600-61616200	Weak transcription	HSMM	muscle
31	chr10:61609800-61617000	Weak transcription	Osteobl	bone
32	chr10:61610000-61616600	Weak transcription	NHLF	lung
33	chr10:61610000-61619600	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:61610000-61624200	Weak transcription	Fetal Thymus	thymus
35	chr10:61610200-61618400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:61610200-61624000	Weak transcription	Hela-S3	cervix
37	chr10:61610200-61624400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:61610400-61617600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:61610400-61619800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:61610400-61624200	Weak transcription	Thymus	Thymus
41	chr10:61610400-61624400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr10:61610400-61628000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr10:61610600-61615800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:61610800-61624400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:61611800-61614400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:61611800-61618000	Enhancers	Brain Anterior Caudate	brain
47	chr10:61612000-61614600	Enhancers	Fetal Lung	lung
48	chr10:61612000-61616600	Enhancers	Colon Smooth Muscle	Colon
49	chr10:61612000-61624000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:61612000-61624000	Weak transcription	HMEC	breast

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