Variant report

Variant	rs1709345
Chromosome Location	chr10:61613078-61613079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61612117..61617926-chr10:61664918..61668274,7	MCF-7	breast:
2	chr10:61611498..61613501-chr10:61665019..61667036,2	MCF-7	breast:
3	chr10:61608407..61613876-chr10:61664743..61669286,7	K562	blood:
4	chr10:61612125..61614506-chr10:61653727..61655792,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10458645	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10821604	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10821605	0.92[ASN][1000 genomes]
rs10821606	0.92[ASN][1000 genomes]
rs10821607	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10994022	0.81[JPT][hapmap]
rs10994051	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1149660	0.83[JPT][hapmap]
rs12243564	0.83[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1621496	0.89[JPT][hapmap]
rs1664256	0.88[JPT][hapmap]
rs1664284	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1664285	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1684901	0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1709342	0.83[JPT][hapmap]
rs1709343	0.84[JPT][hapmap]
rs1871637	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1871638	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2120989	0.89[JPT][hapmap]
rs2120990	0.89[JPT][hapmap]
rs2271562	0.82[JPT][hapmap]
rs2440926	0.84[JPT][hapmap]
rs2458661	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458663	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3106569	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3793878	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3844161	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs3851247	0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3851248	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3862860	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3862861	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3999569	0.84[CEU][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3999570	0.83[CEU][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948372	0.83[CEU][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948373	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948374	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948375	0.86[CEU][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55842846	0.81[ASN][1000 genomes]
rs61848702	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479654	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6479661	0.84[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6479662	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7068104	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7068247	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7070800	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7074685	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7079228	0.83[CEU][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7088808	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7088886	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7908517	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7920403	0.83[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9663498	0.83[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9664183	0.84[CEU][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61571400-61628000	Weak transcription	Spleen	Spleen
2	chr10:61571600-61616000	Weak transcription	Fetal Kidney	kidney
3	chr10:61572000-61615000	Weak transcription	Colonic Mucosa	Colon
4	chr10:61572400-61618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:61578000-61623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:61580200-61624200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:61580400-61624200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:61580600-61616200	Weak transcription	Fetal Brain Male	brain
9	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:61589400-61616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:61591800-61624000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:61592600-61616600	Weak transcription	NH-A	brain
13	chr10:61593200-61629400	Weak transcription	Lung	lung
14	chr10:61594000-61614000	Weak transcription	Small Intestine	intestine
15	chr10:61595200-61614000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:61595800-61624000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:61598800-61614400	Weak transcription	Fetal Brain Female	brain
18	chr10:61599000-61613800	Weak transcription	Aorta	Aorta
19	chr10:61599000-61613800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:61600000-61616400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:61603800-61614200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:61603800-61618400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:61605400-61618400	Weak transcription	Fetal Heart	heart
24	chr10:61606200-61616200	Weak transcription	NHDF-Ad	bronchial
25	chr10:61606800-61614000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:61607800-61614200	Weak transcription	Stomach Mucosa	stomach
27	chr10:61608000-61614000	Weak transcription	Esophagus	oesophagus
28	chr10:61608000-61614000	Weak transcription	Gastric	stomach
29	chr10:61608000-61615000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:61608000-61615600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:61608000-61617800	Weak transcription	Pancreas	Pancrea
32	chr10:61608000-61618200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:61608000-61624000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr10:61608000-61624200	Weak transcription	Right Ventricle	heart
35	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:61608800-61614000	Weak transcription	Fetal Intestine Small	intestine
37	chr10:61608800-61614200	Weak transcription	Fetal Stomach	stomach
38	chr10:61609200-61616200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:61609200-61617800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:61609400-61613400	Weak transcription	A549	lung
41	chr10:61609400-61615600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:61609600-61616200	Weak transcription	HSMM	muscle
43	chr10:61609800-61613800	Weak transcription	Brain Germinal Matrix	brain
44	chr10:61609800-61614000	Weak transcription	Fetal Intestine Large	intestine
45	chr10:61609800-61617000	Weak transcription	Osteobl	bone
46	chr10:61610000-61613800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:61610000-61613800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:61610000-61614000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:61610000-61616600	Weak transcription	NHLF	lung
50	chr10:61610000-61619600	Weak transcription	Fetal Muscle Leg	muscle

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