Variant report

Variant	rs1684901
Chromosome Location	chr10:61632628-61632629
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61631763..61634620-chr10:61659289..61660920,2	MCF-7	breast:
2	chr10:61629487..61632652-chr10:61653201..61655969,3	K562	blood:
3	chr10:61630214..61632918-chr10:61637567..61639312,2	MCF-7	breast:
4	chr10:61631384..61634848-chr10:61664834..61667747,10	MCF-7	breast:
5	chr10:61630078..61632932-chr10:61659731..61661689,2	MCF-7	breast:
6	chr10:61631791..61635794-chr10:61666340..61668454,4	K562	blood:
7	chr10:61632537..61634435-chr10:61640656..61642857,2	MCF-7	breast:
8	chr10:61627957..61629887-chr10:61630516..61633245,2	MCF-7	breast:
9	chr10:61632628..61634680-chr10:61647299..61649721,2	K562	blood:
10	chr10:61618470..61621431-chr10:61631382..61633046,2	K562	blood:
11	chr10:61632628..61635950-chr10:61647299..61651205,3	K562	blood:
12	chr10:61628330..61633371-chr10:61664622..61667776,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10458645	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs10821604	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10821607	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1171786	0.80[JPT][hapmap]
rs1171812	0.89[CEU][hapmap];0.89[GIH][hapmap]
rs1171830	0.96[CEU][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap]
rs1177701	0.85[GIH][hapmap];0.83[MEX][hapmap]
rs1621496	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1626088	0.89[GIH][hapmap]
rs1664255	0.81[ASN][1000 genomes]
rs1664256	0.85[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1664284	0.90[JPT][hapmap]
rs1664285	0.89[JPT][hapmap]
rs1684896	0.81[ASN][1000 genomes]
rs1709345	0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1871637	0.84[JPT][hapmap]
rs1871638	0.85[JPT][hapmap]
rs2120989	0.85[JPT][hapmap]
rs2120990	0.85[JPT][hapmap]
rs2440907	1.00[EUR][1000 genomes]
rs2458661	0.85[CHB][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2458663	0.90[JPT][hapmap]
rs3844161	0.85[JPT][hapmap]
rs3851247	0.85[JPT][hapmap]
rs3999569	0.90[JPT][hapmap]
rs3999570	0.85[JPT][hapmap]
rs4948372	0.85[JPT][hapmap]
rs4948374	0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4948375	0.88[JPT][hapmap]
rs6479654	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs6479661	0.85[JPT][hapmap]
rs7079228	0.85[JPT][hapmap]
rs7088886	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs7908517	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7920403	0.85[JPT][hapmap]
rs9663498	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs9664183	0.85[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1684901	EGR2	cis	parietal	SCAN

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61583200-61640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61608000-61637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:61618600-61633200	Weak transcription	HSMM	muscle
4	chr10:61624800-61633000	Weak transcription	Brain Germinal Matrix	brain
5	chr10:61624800-61641000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:61625000-61638800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:61625200-61639200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:61628600-61632800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:61628600-61632800	Enhancers	K562	blood
11	chr10:61628600-61638600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:61629000-61633000	Weak transcription	Hela-S3	cervix
13	chr10:61629000-61634200	Weak transcription	HepG2	liver
14	chr10:61629800-61635400	Enhancers	Brain Hippocampus Middle	brain
15	chr10:61630000-61647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:61630200-61633400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:61630200-61633400	Enhancers	Fetal Intestine Large	intestine
18	chr10:61630200-61633400	Enhancers	Fetal Stomach	stomach
19	chr10:61630400-61633200	Enhancers	Primary T cells fromperipheralblood	blood
20	chr10:61630600-61634000	Enhancers	Fetal Intestine Small	intestine
21	chr10:61631000-61633400	Enhancers	Psoas Muscle	Psoas
22	chr10:61631000-61635600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr10:61631200-61633200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr10:61631200-61633400	Enhancers	Fetal Thymus	thymus
25	chr10:61631200-61634000	Enhancers	Fetal Lung	lung
26	chr10:61631200-61634400	Enhancers	Stomach Mucosa	stomach
27	chr10:61631200-61635600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr10:61631400-61632800	Enhancers	Primary B cells from peripheral blood	blood
29	chr10:61631400-61632800	Enhancers	GM12878-XiMat	blood
30	chr10:61631400-61633200	Enhancers	Lung	lung
31	chr10:61631400-61633400	Enhancers	Thymus	Thymus
32	chr10:61631400-61634600	Enhancers	Small Intestine	intestine
33	chr10:61631400-61634800	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr10:61631400-61635200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr10:61631400-61635800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr10:61631600-61633200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:61631600-61633400	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr10:61631600-61633400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:61631600-61634400	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr10:61631600-61634400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr10:61631600-61634600	Enhancers	Primary B cells from cord blood	blood
42	chr10:61631600-61635600	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr10:61631800-61633000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:61631800-61633000	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr10:61631800-61633600	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr10:61631800-61634000	Enhancers	Fetal Heart	heart
47	chr10:61631800-61634600	Enhancers	Pancreas	Pancrea
48	chr10:61631800-61634800	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr10:61631800-61635000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:61631800-61635000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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