Variant report

Variant	rs1171830
Chromosome Location	chr10:61665886-61665887
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61643762..61645786-chr10:61664123..61666003,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10821618	0.80[CHB][hapmap]
rs1171582	0.81[MKK][hapmap]
rs1171812	0.85[CEU][hapmap];0.91[CHB][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap]
rs1171814	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1171832	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1626088	0.80[MEX][hapmap]
rs1684901	0.96[CEU][hapmap];0.81[GIH][hapmap];0.93[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61663400-61668400	Active TSS	Aorta	Aorta
2	chr10:61663800-61666800	Active TSS	Colon Smooth Muscle	Colon
3	chr10:61663800-61667000	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr10:61664000-61667000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:61664000-61667000	Active TSS	Esophagus	oesophagus
6	chr10:61664000-61667200	Active TSS	Fetal Intestine Large	intestine
7	chr10:61664200-61666000	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr10:61664200-61666000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr10:61664200-61666400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:61664200-61667000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:61664200-61668800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:61664400-61666800	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr10:61664400-61666800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:61664400-61667000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr10:61664400-61667000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr10:61664400-61667000	Active TSS	Ovary	ovary
17	chr10:61664600-61667000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:61664600-61667200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:61664600-61668800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr10:61664800-61666800	Active TSS	H1 Cell Line	embryonic stem cell
21	chr10:61664800-61666800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:61664800-61666800	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr10:61664800-61666800	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr10:61664800-61666800	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr10:61664800-61666800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:61664800-61666800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:61664800-61666800	Active TSS	Gastric	stomach
28	chr10:61664800-61666800	Active TSS	Stomach Mucosa	stomach
29	chr10:61664800-61666800	Active TSS	HMEC	breast
30	chr10:61664800-61666800	Active TSS	HSMM	muscle
31	chr10:61664800-61666800	Active TSS	NHDF-Ad	bronchial
32	chr10:61664800-61667000	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr10:61664800-61667000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:61664800-61667000	Active TSS	Left Ventricle	heart
35	chr10:61664800-61667000	Active TSS	Placenta Amnion	Placenta Amnion
36	chr10:61664800-61667000	Active TSS	Right Ventricle	heart
37	chr10:61664800-61667800	Active TSS	Fetal Intestine Small	intestine
38	chr10:61664800-61668600	Active TSS	Right Atrium	heart
39	chr10:61664800-61668800	Active TSS	Stomach Smooth Muscle	stomach
40	chr10:61665000-61666000	Bivalent/Poised TSS	HepG2	liver
41	chr10:61665000-61666800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:61665000-61666800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:61665000-61666800	Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr10:61665000-61666800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
45	chr10:61665000-61666800	Active TSS	HSMMtube	muscle
46	chr10:61665000-61667000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:61665000-61667000	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr10:61665000-61667000	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr10:61665000-61667000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:61665000-61667000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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