Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10128501	0.91[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10821585	0.91[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10993981	0.92[ASN][1000 genomes]
rs10993982	0.92[ASN][1000 genomes]
rs1171583	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1171586	0.93[ASN][1000 genomes]
rs1171587	0.85[ASN][1000 genomes]
rs1171590	0.92[ASN][1000 genomes]
rs1171594	0.88[ASN][1000 genomes]
rs1171609	0.86[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1171610	0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs1171830	0.81[MKK][hapmap]
rs1180565	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2137905	0.87[ASN][1000 genomes]
rs2671611	0.91[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs2671612	0.87[ASN][1000 genomes]
rs2671613	1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap];0.93[ASN][1000 genomes]
rs4948360	0.87[ASN][1000 genomes]
rs6479648	0.89[ASN][1000 genomes]
rs9943397	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1171582	EGR2	cis	parietal	SCAN
rs1171582	SLC16A9	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61487200-61494800	Weak transcription	Stomach Mucosa	stomach
2	chr10:61494000-61494800	Enhancers	Skeletal Muscle Female	skeletal muscle

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