Variant report

Variant	rs10128501
Chromosome Location	chr10:61508784-61508785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10821585	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10993981	0.99[ASN][1000 genomes]
rs10993982	0.99[ASN][1000 genomes]
rs1171582	0.91[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1171583	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1171586	0.97[ASN][1000 genomes]
rs1171587	0.92[ASN][1000 genomes]
rs1171590	0.99[ASN][1000 genomes]
rs1171594	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1171609	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs1171610	0.91[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs1180565	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2137905	0.88[ASN][1000 genomes]
rs2671611	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2671612	0.88[ASN][1000 genomes]
rs2671613	0.87[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs4948360	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479648	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9943397	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10128501	SLC16A9	cis	cerebellum	SCAN
rs10128501	SLC16A9	cis	Cerebellum	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61505400-61511000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:61507000-61509000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:61507200-61510600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr10:61507400-61508800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:61507400-61510200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr10:61508200-61508800	Enhancers	Fetal Kidney	kidney
7	chr10:61508200-61511000	Enhancers	Psoas Muscle	Psoas
8	chr10:61508400-61508800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:61508400-61509200	Enhancers	Fetal Intestine Large	intestine
10	chr10:61508400-61509400	Enhancers	Stomach Mucosa	stomach
11	chr10:61508600-61509000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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