Variant report

Variant	rs1171590
Chromosome Location	chr10:61504576-61504577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10128501	0.99[ASN][1000 genomes]
rs10821585	0.93[ASN][1000 genomes]
rs10993981	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993982	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171582	0.92[ASN][1000 genomes]
rs1171583	0.97[ASN][1000 genomes]
rs1171586	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171587	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1171594	0.96[ASN][1000 genomes]
rs1171609	0.87[ASN][1000 genomes]
rs1171610	0.89[ASN][1000 genomes]
rs1180565	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2137905	0.90[ASN][1000 genomes]
rs2671611	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2671612	0.89[ASN][1000 genomes]
rs2671613	0.87[ASN][1000 genomes]
rs4948360	0.94[ASN][1000 genomes]
rs6479648	0.97[ASN][1000 genomes]
rs9943397	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61495200-61507400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:61496000-61507200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:61498200-61506200	Weak transcription	Stomach Mucosa	stomach
4	chr10:61498600-61507000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:61501800-61507400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:61504200-61505400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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