Variant report

Variant	rs1171610
Chromosome Location	chr10:61477697-61477698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10128501	0.91[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs10821585	0.91[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10993981	0.89[ASN][1000 genomes]
rs10993982	0.89[ASN][1000 genomes]
rs1171582	0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs1171583	0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs1171586	0.91[ASN][1000 genomes]
rs1171587	0.83[ASN][1000 genomes]
rs1171590	0.89[ASN][1000 genomes]
rs1171594	0.85[ASN][1000 genomes]
rs1171609	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1180565	0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs2137905	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2671611	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2671612	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2671613	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4948360	0.84[ASN][1000 genomes]
rs6479648	0.86[ASN][1000 genomes]
rs9943397	0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1171610	SLC16A9	cis	cerebellum	SCAN
rs1171610	CCDC6	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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