Variant report

Variant	rs2671613
Chromosome Location	chr10:61486286-61486287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10128501	0.87[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10821585	0.87[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs10993981	0.87[ASN][1000 genomes]
rs10993982	0.87[ASN][1000 genomes]
rs1171582	1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap];0.93[ASN][1000 genomes]
rs1171583	0.91[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1171586	0.88[ASN][1000 genomes]
rs1171587	0.81[ASN][1000 genomes]
rs1171590	0.87[ASN][1000 genomes]
rs1171594	0.83[ASN][1000 genomes]
rs1171609	0.91[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1171610	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1180565	0.91[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs2137905	0.93[ASN][1000 genomes]
rs2671611	0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs2671612	0.86[ASN][1000 genomes]
rs4948360	0.82[ASN][1000 genomes]
rs6479648	0.84[ASN][1000 genomes]
rs9943397	0.82[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2671613	CCDC6	cis	cerebellum	SCAN
rs2671613	SLC16A9	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61483400-61486600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr10:61484400-61487000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:61484400-61487600	Weak transcription	Psoas Muscle	Psoas
4	chr10:61485200-61486600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr10:61485200-61486600	Enhancers	Stomach Mucosa	stomach
6	chr10:61485600-61493200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:61486000-61486400	Enhancers	Colonic Mucosa	Colon
8	chr10:61486200-61486400	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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