Variant report

Variant	rs12243559
Chromosome Location	chr10:61539781-61539782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10458645	0.80[JPT][hapmap]
rs10821593	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821604	0.80[JPT][hapmap]
rs10994004	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994005	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10994021	0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10994022	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10994026	0.84[JPT][hapmap]
rs10994027	0.84[JPT][hapmap]
rs10994030	0.88[CHD][hapmap];0.84[JPT][hapmap]
rs10994031	0.84[JPT][hapmap]
rs1149660	0.83[CHD][hapmap]
rs11817729	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12242758	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12261734	0.86[ASN][1000 genomes]
rs12267686	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16914233	0.84[JPT][hapmap]
rs1709342	0.83[CHD][hapmap]
rs1871637	0.84[JPT][hapmap]
rs1871638	0.85[JPT][hapmap]
rs1949257	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2120989	0.85[JPT][hapmap]
rs2120990	0.85[JPT][hapmap]
rs2271562	0.88[JPT][hapmap]
rs3793878	0.86[CHD][hapmap]
rs3793882	0.85[ASN][1000 genomes]
rs3844161	0.85[JPT][hapmap]
rs3851247	0.85[JPT][hapmap]
rs3999569	0.84[JPT][hapmap]
rs3999570	0.85[JPT][hapmap]
rs4948372	0.85[JPT][hapmap]
rs4948374	0.80[JPT][hapmap]
rs4948375	0.89[JPT][hapmap]
rs55958518	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56692362	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6479653	0.88[CHD][hapmap];0.84[JPT][hapmap]
rs6479654	0.80[JPT][hapmap]
rs6479661	0.85[JPT][hapmap]
rs68045193	0.87[ASN][1000 genomes]
rs7078533	0.81[JPT][hapmap]
rs7079228	0.85[JPT][hapmap]
rs7079588	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs7088755	0.84[JPT][hapmap]
rs7088886	0.80[JPT][hapmap]
rs7092259	0.84[JPT][hapmap]
rs7895724	0.88[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7901722	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7901952	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7910256	0.88[CHD][hapmap];0.84[JPT][hapmap]
rs7916673	0.88[ASN][1000 genomes]
rs7917071	0.88[ASN][1000 genomes]
rs7920049	0.84[JPT][hapmap]
rs7920403	0.85[JPT][hapmap]
rs882896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9664183	0.85[JPT][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61538600-61541400	Enhancers	HSMMtube	muscle
3	chr10:61538800-61541000	Enhancers	Fetal Muscle Leg	muscle
4	chr10:61539000-61540200	Enhancers	Fetal Muscle Trunk	muscle
5	chr10:61539000-61540200	Enhancers	Ovary	ovary
6	chr10:61539200-61540200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:61539200-61540200	Enhancers	NH-A	brain
8	chr10:61539200-61540800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:61539400-61540000	Enhancers	Fetal Lung	lung
10	chr10:61539400-61540200	Enhancers	Brain Germinal Matrix	brain
11	chr10:61539400-61540200	Enhancers	Fetal Stomach	stomach
12	chr10:61539400-61540200	Enhancers	Right Atrium	heart
13	chr10:61539600-61540000	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:61539600-61540000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr10:61539600-61540000	Flanking Active TSS	HSMM	muscle
16	chr10:61539600-61540800	Enhancers	Psoas Muscle	Psoas

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