Variant report

Variant	rs11724291
Chromosome Location	chr4:96110102-96110103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96103609..96107002-chr4:96107202..96110546,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10516959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11722018	1.00[CEU][hapmap]
rs11936736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11945547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1434540	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1434542	0.89[ASN][1000 genomes]
rs1434543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17023055	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17023071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17023083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17023105	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17023107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17023119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1836262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1865380	0.89[ASN][1000 genomes]
rs2082656	0.89[ASN][1000 genomes]
rs34585936	0.89[ASN][1000 genomes]
rs3755881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3796438	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3796441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3796447	0.89[ASN][1000 genomes]
rs3821965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs59204183	0.89[ASN][1000 genomes]
rs59357293	0.89[ASN][1000 genomes]
rs60968970	0.89[ASN][1000 genomes]
rs6532533	0.89[ASN][1000 genomes]
rs6826261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6826477	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs73839216	1.00[EUR][1000 genomes]
rs73839218	0.89[ASN][1000 genomes]
rs73839929	1.00[EUR][1000 genomes]
rs7441644	0.89[ASN][1000 genomes]
rs7662630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7666742	1.00[EUR][1000 genomes]
rs7674881	0.89[ASN][1000 genomes]
rs7682667	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7691978	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96084600-96111800	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:96091000-96111600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:96098000-96127000	Weak transcription	Right Atrium	heart
4	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
5	chr4:96103000-96111600	Weak transcription	Fetal Brain Male	brain
6	chr4:96103200-96111200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:96103600-96123000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:96104400-96115000	Weak transcription	Aorta	Aorta
9	chr4:96105600-96111600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:96105600-96111800	Weak transcription	Brain Anterior Caudate	brain
11	chr4:96105800-96111800	Weak transcription	Brain Angular Gyrus	brain
12	chr4:96105800-96123200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:96106600-96111600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:96107800-96110400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:96108200-96111800	Weak transcription	Fetal Stomach	stomach
16	chr4:96108600-96111000	Enhancers	Fetal Thymus	thymus
17	chr4:96108600-96112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:96108600-96112000	Weak transcription	Brain Germinal Matrix	brain
19	chr4:96108600-96113800	Weak transcription	Fetal Lung	lung
20	chr4:96108800-96111800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:96108800-96111800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:96109000-96110800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:96109200-96110600	Enhancers	Primary T cells from cord blood	blood
24	chr4:96109200-96112200	Weak transcription	Ovary	ovary
25	chr4:96109400-96110600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr4:96109400-96110600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr4:96109400-96110600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr4:96109400-96110600	Enhancers	Dnd41	blood
29	chr4:96109600-96110600	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr4:96109600-96110600	Enhancers	Thymus	Thymus
31	chr4:96109800-96110600	Enhancers	Primary T cells fromperipheralblood	blood
32	chr4:96109800-96110600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr4:96109800-96110800	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr4:96110000-96110200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr4:96110000-96110200	Enhancers	Brain Cingulate Gyrus	brain
36	chr4:96110000-96110400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr4:96110000-96110400	Weak transcription	Brain Hippocampus Middle	brain
38	chr4:96110000-96110600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr4:96110000-96110600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr4:96110000-96111600	Weak transcription	Brain Substantia Nigra	brain
41	chr4:96110000-96112000	Weak transcription	K562	blood

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