Variant report

Variant	rs34585936
Chromosome Location	chr4:96091414-96091415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10516959	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724291	0.89[ASN][1000 genomes]
rs11936736	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945547	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1434540	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1434542	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1434543	0.95[ASN][1000 genomes]
rs17023055	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023071	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023083	1.00[ASN][1000 genomes]
rs17023105	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023107	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023119	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836262	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865380	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082656	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796438	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796441	1.00[ASN][1000 genomes]
rs3796447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821965	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59204183	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59357293	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60968970	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532533	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826261	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826477	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73839218	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7441644	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662630	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7674881	1.00[ASN][1000 genomes]
rs7682667	1.00[ASN][1000 genomes]
rs7691978	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96059800-96100400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:96080400-96098600	Weak transcription	Fetal Kidney	kidney
3	chr4:96084600-96111800	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:96084800-96099800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:96087600-96107000	Weak transcription	A549	lung
6	chr4:96088000-96091800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:96088200-96092000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:96088600-96091600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:96089200-96098400	Weak transcription	Aorta	Aorta
10	chr4:96089200-96098400	Weak transcription	Ovary	ovary
11	chr4:96089400-96091800	Genic enhancers	Brain Inferior Temporal Lobe	brain
12	chr4:96089600-96091800	Strong transcription	Fetal Lung	lung
13	chr4:96089800-96091600	Genic enhancers	Brain Anterior Caudate	brain
14	chr4:96089800-96091800	Enhancers	Brain Cingulate Gyrus	brain
15	chr4:96090000-96092000	Enhancers	Brain Substantia Nigra	brain
16	chr4:96090200-96091800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:96090400-96091600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:96090600-96097600	Weak transcription	Fetal Stomach	stomach
19	chr4:96090600-96098400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:96090800-96091600	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:96091000-96111600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:96091200-96092000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:96091200-96098000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:96091400-96091600	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr4:96091400-96092000	Enhancers	Brain Angular Gyrus	brain
26	chr4:96091400-96098000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:96091400-96098200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr4:96091400-96109400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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