Variant report

Variant	rs7674881
Chromosome Location	chr4:96052001-96052002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10516959	1.00[ASN][1000 genomes]
rs11724291	0.89[ASN][1000 genomes]
rs11936736	1.00[ASN][1000 genomes]
rs11945547	1.00[ASN][1000 genomes]
rs1434540	0.94[ASN][1000 genomes]
rs1434542	1.00[ASN][1000 genomes]
rs1434543	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17023055	1.00[ASN][1000 genomes]
rs17023071	1.00[ASN][1000 genomes]
rs17023083	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023105	1.00[ASN][1000 genomes]
rs17023107	1.00[ASN][1000 genomes]
rs17023119	1.00[ASN][1000 genomes]
rs1836262	1.00[ASN][1000 genomes]
rs1865380	1.00[ASN][1000 genomes]
rs2082656	1.00[ASN][1000 genomes]
rs34585936	1.00[ASN][1000 genomes]
rs3796438	1.00[ASN][1000 genomes]
rs3796441	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796447	1.00[ASN][1000 genomes]
rs3821965	1.00[ASN][1000 genomes]
rs59204183	1.00[ASN][1000 genomes]
rs59357293	1.00[ASN][1000 genomes]
rs60968970	1.00[ASN][1000 genomes]
rs6532533	1.00[ASN][1000 genomes]
rs6826261	1.00[ASN][1000 genomes]
rs6826477	1.00[ASN][1000 genomes]
rs73839218	1.00[ASN][1000 genomes]
rs7441644	1.00[ASN][1000 genomes]
rs7662630	0.95[ASN][1000 genomes]
rs7682667	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7691978	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96016000-96060600	Weak transcription	Thymus	Thymus
2	chr4:96016600-96054200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:96024200-96060600	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:96025000-96054600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:96026400-96057000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:96030400-96054200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:96034200-96079200	Weak transcription	Fetal Kidney	kidney
8	chr4:96034800-96060600	Weak transcription	Ovary	ovary
9	chr4:96047400-96052400	Weak transcription	Fetal Thymus	thymus
10	chr4:96047400-96060600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr4:96050200-96052200	Enhancers	HSMM	muscle
12	chr4:96050400-96052600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:96050400-96052600	Enhancers	NHLF	lung
14	chr4:96051000-96052200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:96051000-96052200	Enhancers	HSMMtube	muscle
16	chr4:96051200-96052600	Enhancers	NH-A	brain
17	chr4:96051200-96052600	Enhancers	Osteobl	bone
18	chr4:96051400-96055400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:96051400-96075800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:96051800-96052400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:96051800-96052600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:96051800-96052600	Enhancers	Fetal Intestine Small	intestine
23	chr4:96051800-96053000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:96051800-96054600	Weak transcription	Primary T cells from cord blood	blood
25	chr4:96051800-96055400	Strong transcription	Dnd41	blood
26	chr4:96051800-96055800	Weak transcription	Fetal Lung	lung
27	chr4:96052000-96052200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:96052000-96053200	Genic enhancers	A549	lung

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