Variant report
| Variant | rs11726503 |
|---|---|
| Chromosome Location | chr4:99883163-99883164 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000263923 | Chromatin interaction |
| ENSG00000238449 | Chromatin interaction |
| ENSG00000214886 | Chromatin interaction |
| ENSG00000151247 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10489131 | 0.81[ASN][1000 genomes] |
| rs10489132 | 0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10516438 | 1.00[ASW][hapmap];0.86[CHB][hapmap] |
| rs11097642 | 0.87[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes] |
| rs11737022 | 0.81[ASN][1000 genomes] |
| rs1230159 | 0.89[GIH][hapmap] |
| rs1230178 | 0.89[GIH][hapmap] |
| rs1230182 | 0.89[GIH][hapmap] |
| rs1230186 | 0.84[GIH][hapmap] |
| rs1230188 | 0.84[GIH][hapmap] |
| rs1230190 | 0.84[GIH][hapmap] |
| rs1230206 | 0.84[GIH][hapmap] |
| rs12507214 | 0.86[CHB][hapmap] |
| rs12508113 | 0.82[ASN][1000 genomes] |
| rs12513260 | 0.87[CHB][hapmap] |
| rs12651447 | 0.86[CHB][hapmap] |
| rs2028686 | 0.86[CHB][hapmap] |
| rs55985943 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56669998 | 0.80[ASN][1000 genomes] |
| rs60067299 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs60478839 | 0.83[ASN][1000 genomes] |
| rs7654109 | 0.86[CHB][hapmap] |
| rs7661773 | 0.90[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7683532 | 0.87[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes] |
| rs7694657 | 0.87[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009017 | chr4:99669441-100406394 | Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:99882600-99883400 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 2 | chr4:99883000-99883600 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
