Variant report
| Variant | rs60067299 |
|---|---|
| Chromosome Location | chr4:99908090-99908091 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:99904805..99907417-chr4:99907702..99910047,2 | K562 | blood: | |
| 2 | chr4:99907380..99909328-chr4:99912135..99914456,2 | K562 | blood: | |
| 3 | chr4:99901208..99902809-chr4:99907271..99908772,2 | K562 | blood: | |
| 4 | chr4:99906747..99909134-chr4:99909881..99912158,2 | MCF-7 | breast: | |
| 5 | chr4:99906138..99908249-chr4:99916071..99917615,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164024 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10489131 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10489132 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11097642 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11721431 | 0.82[EUR][1000 genomes] |
| rs11726503 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11737022 | 0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12508113 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12513260 | 0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs55985943 | 0.90[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7661773 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7683532 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7687617 | 0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7694657 | 0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009017 | chr4:99669441-100406394 | Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
