Variant report

Variant	rs55985943
Chromosome Location	chr4:99896917-99896918
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10489131	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10489132	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11097642	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11726503	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11737022	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12508113	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12513260	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs35525191	0.80[ASN][1000 genomes]
rs57645502	0.81[ASN][1000 genomes]
rs60067299	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60478839	0.83[ASN][1000 genomes]
rs7661773	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7683532	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7687617	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7694657	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99896200-99897800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:99896400-99897800	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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