Variant report
| Variant | rs11727711 |
|---|---|
| Chromosome Location | chr4:46783728-46783729 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1002190 | 0.85[ASN][1000 genomes] |
| rs10030045 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10050154 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1123700 | 0.85[ASN][1000 genomes] |
| rs1124442 | 0.85[ASN][1000 genomes] |
| rs11735744 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11934342 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11943836 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12503660 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12509566 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1588606 | 0.85[ASN][1000 genomes] |
| rs1588607 | 0.85[ASN][1000 genomes] |
| rs2036941 | 0.82[ASN][1000 genomes] |
| rs28418541 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs28649107 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4312731 | 0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4478161 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4588430 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs55809140 | 0.85[ASN][1000 genomes] |
| rs59277224 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6813531 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6830441 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9999799 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv878998 | chr4:46565663-46823634 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv878999 | chr4:46565663-46860626 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv461356 | chr4:46635167-46846042 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv594117 | chr4:46635167-46846042 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv879000 | chr4:46635167-46890046 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:46783600-46784200 | Active TSS | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr4:46783600-46784200 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
