Variant report

Variant	rs1124442
Chromosome Location	chr4:46866251-46866252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10005129	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10015595	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10018906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1002190	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029471	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10030045	0.83[ASN][1000 genomes]
rs10032643	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10805150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10938455	0.96[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10938456	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10938457	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1123700	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727711	0.85[ASN][1000 genomes]
rs11735744	0.90[ASN][1000 genomes]
rs11934342	0.92[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11946667	0.92[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs11947685	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12503660	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12503816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12504855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12505727	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12508418	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs12509566	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12511771	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12511862	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs12512515	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1473092	0.80[CEU][hapmap]
rs1588606	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588607	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036941	0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2175554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2203139	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2350889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28418541	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28649107	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4312731	0.90[ASN][1000 genomes]
rs4478161	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4588430	0.85[ASN][1000 genomes]
rs55809140	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813531	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6831990	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6835325	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs6838604	0.88[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs6855790	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7435882	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7438079	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs925479	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs9996022	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs9997648	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9998421	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs9999799	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879000	chr4:46635167-46890046	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879001	chr4:46823634-46893766	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46865800-46866400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:46866000-46866600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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