Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10018906	0.81[CEU][hapmap]
rs10805150	0.81[CEU][hapmap]
rs1123700	0.82[AMR][1000 genomes]
rs1124442	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs11735590	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11947685	0.87[ASW][hapmap];0.81[LWK][hapmap]
rs12503660	0.84[CEU][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12503816	0.81[CEU][hapmap]
rs12504855	0.81[CEU][hapmap];0.86[MEX][hapmap]
rs12505727	0.82[CHB][hapmap];0.81[YRI][hapmap]
rs1473092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1588605	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1588606	0.84[AMR][1000 genomes]
rs1588607	0.85[AMR][1000 genomes]
rs2036941	0.84[AMR][1000 genomes]
rs2036943	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs2175554	0.80[CEU][hapmap]
rs2203139	0.81[CEU][hapmap];0.82[MEX][hapmap]
rs2350889	0.94[ASW][hapmap];0.81[CEU][hapmap];0.86[MEX][hapmap]
rs28396265	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28418541	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4478161	0.87[ASW][hapmap]
rs55809140	0.84[AMR][1000 genomes]
rs6813531	0.87[CEU][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6835325	0.82[CEU][hapmap]
rs7435882	0.83[CEU][hapmap]
rs9997648	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878999	chr4:46565663-46860626	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv461356	chr4:46635167-46846042	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv594117	chr4:46635167-46846042	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879000	chr4:46635167-46890046	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879001	chr4:46823634-46893766	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs925479	KCTD8	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46837200-46840800	Enhancers	Liver	Liver
2	chr4:46839000-46841600	Enhancers	HepG2	liver

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