Variant report

Variant	rs12505727
Chromosome Location	chr4:46825179-46825180
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10005129	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10015595	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10018906	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1002190	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10029471	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10030045	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10032643	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10050154	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10805150	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10938455	0.96[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10938456	0.96[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap]
rs10938457	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1123700	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1124442	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11727711	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11735744	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11934342	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11943836	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11946667	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs11947685	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs12503660	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12503816	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12504855	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12508418	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs12509566	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12511771	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12511862	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs12512515	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1473092	0.82[CHB][hapmap]
rs1588606	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1588607	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2036941	0.96[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2175554	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2203139	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2350889	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28418541	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28649107	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4312731	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4478161	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4588430	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55809140	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59277224	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6813531	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6830441	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6831990	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6835325	0.96[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs6838604	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs6855790	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7435882	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs7438079	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs925479	0.82[CHB][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9996022	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs9997648	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs9998421	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs9999799	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878999	chr4:46565663-46860626	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv461356	chr4:46635167-46846042	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv594117	chr4:46635167-46846042	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879000	chr4:46635167-46890046	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879001	chr4:46823634-46893766	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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