Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:46845685..46846601-chr4:47385587..47386221,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1002190	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10030045	0.85[ASN][1000 genomes]
rs10050154	0.82[ASN][1000 genomes]
rs1123700	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1124442	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11727711	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11735744	0.92[ASN][1000 genomes]
rs11934342	0.92[ASN][1000 genomes]
rs11943836	0.81[ASN][1000 genomes]
rs12503660	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509566	0.90[ASN][1000 genomes]
rs1588606	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1588607	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2036941	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28649107	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4312731	0.92[ASN][1000 genomes]
rs4478161	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4588430	0.87[ASN][1000 genomes]
rs55809140	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59277224	0.82[ASN][1000 genomes]
rs6813531	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6830441	0.82[ASN][1000 genomes]
rs925479	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878999	chr4:46565663-46860626	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv461356	chr4:46635167-46846042	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv594117	chr4:46635167-46846042	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879000	chr4:46635167-46890046	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879001	chr4:46823634-46893766	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46842200-46846400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:46842600-46848400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:46845600-46846800	Enhancers	Adipose Nuclei	Adipose

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