Variant report

Variant	rs11728225
Chromosome Location	chr4:15463697-15463698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11722737	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728800	0.81[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];1.00[ASN][1000 genomes]
rs11737539	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12500458	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13118306	0.97[ASN][1000 genomes]
rs13131700	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs13132762	0.82[CHB][hapmap];0.81[AMR][1000 genomes]
rs13146183	0.81[AMR][1000 genomes]
rs13149679	0.83[CEU][hapmap];0.85[CHB][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes]
rs13152775	0.82[CHB][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs16892040	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17384915	0.85[CHB][hapmap];0.83[GIH][hapmap];0.94[MEX][hapmap];0.81[AMR][1000 genomes]
rs17385047	0.83[CEU][hapmap];0.85[CHB][hapmap];0.81[GIH][hapmap];0.88[MEX][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes]
rs17469433	0.85[CHB][hapmap]
rs17469572	0.85[CHB][hapmap];0.81[GIH][hapmap];0.88[MEX][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes]
rs17469704	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2110362	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2192358	0.86[AMR][1000 genomes]
rs2314588	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2314590	0.85[CHB][hapmap];0.81[GIH][hapmap];0.94[MEX][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3087622	1.00[ASN][1000 genomes]
rs34465372	0.94[ASN][1000 genomes]
rs4698387	1.00[ASN][1000 genomes]
rs961588	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv2760903	chr4:15458598-15464619	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:15459600-15470600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:15462000-15471000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links