Variant report

Variant	rs13149679
Chromosome Location	chr4:15430571-15430572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:15430318-15430612	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr4:15430418-15430576	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr4:15430342-15430572	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000249252	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11728225	0.82[AMR][1000 genomes]
rs11737539	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12500458	0.85[CHB][hapmap]
rs13108525	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131700	0.85[CHB][hapmap];0.85[YRI][hapmap]
rs13132762	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146183	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150862	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152775	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17384915	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17385047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469433	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469572	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469634	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469704	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2110362	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192358	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2314588	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2314590	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2872669	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971067	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35132992	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866319	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62289263	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733388	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961588	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15427000-15431400	Active TSS	Aorta	Aorta
2	chr4:15428600-15430600	Enhancers	NHDF-Ad	bronchial
3	chr4:15428600-15430800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:15428600-15430800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr4:15428600-15431400	Enhancers	Adipose Nuclei	Adipose
6	chr4:15428800-15430800	Enhancers	Fetal Stomach	stomach
7	chr4:15428800-15435400	Weak transcription	NHEK	skin
8	chr4:15429000-15430600	Enhancers	Colon Smooth Muscle	Colon
9	chr4:15429000-15430600	Enhancers	Fetal Lung	lung
10	chr4:15429000-15430800	Enhancers	Brain Cingulate Gyrus	brain
11	chr4:15429200-15430800	Enhancers	Brain Substantia Nigra	brain
12	chr4:15429600-15430600	Enhancers	Brain Anterior Caudate	brain
13	chr4:15429600-15430600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:15429600-15430600	Enhancers	Fetal Muscle Leg	muscle
15	chr4:15429600-15430800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:15429600-15430800	Enhancers	Brain Germinal Matrix	brain
17	chr4:15429600-15430800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr4:15429800-15430800	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr4:15429800-15435200	Weak transcription	Osteobl	bone
20	chr4:15430000-15430600	Enhancers	Brain Hippocampus Middle	brain
21	chr4:15430000-15430800	Enhancers	Ovary	ovary
22	chr4:15430000-15435000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:15430200-15430600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:15430200-15430600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:15430200-15430600	Enhancers	Brain Angular Gyrus	brain
26	chr4:15430400-15431000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:15430400-15431200	Active TSS	Stomach Smooth Muscle	stomach
28	chr4:15430400-15431400	Enhancers	Rectal Smooth Muscle	rectum
29	chr4:15430400-15435000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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