Variant report

Variant	rs35132992
Chromosome Location	chr4:15412694-15412695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CC2D2A-1	chr4:15412322-15413823	NONHSAT095623

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11722737	0.89[AFR][1000 genomes]
rs11737539	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13108525	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132762	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146183	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149679	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150862	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152775	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17384915	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17385047	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469433	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469572	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469634	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469704	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2110362	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192358	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2314588	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2314590	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2872669	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971067	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62289263	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733388	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961588	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15404000-15414800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:15404000-15415600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:15405400-15416000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:15405400-15422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:15406400-15414800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:15407600-15418000	Weak transcription	Left Ventricle	heart
7	chr4:15408200-15413000	Weak transcription	Spleen	Spleen
8	chr4:15411000-15413400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:15411000-15417200	Enhancers	Primary B cells from peripheral blood	blood
10	chr4:15411200-15413400	Enhancers	Aorta	Aorta
11	chr4:15411200-15413600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:15411200-15413600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:15411200-15413600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr4:15411200-15415000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr4:15411200-15415400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr4:15411200-15419800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr4:15411400-15413800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr4:15411400-15418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:15411400-15418600	Enhancers	Primary hematopoietic stem cells	blood
20	chr4:15411600-15414000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr4:15411600-15416000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:15411800-15412800	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:15411800-15413200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:15411800-15416800	Weak transcription	Small Intestine	intestine
25	chr4:15412000-15412800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:15412000-15413000	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr4:15412000-15413200	Enhancers	Adipose Nuclei	Adipose
28	chr4:15412000-15413400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr4:15412200-15412800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:15412200-15412800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr4:15412200-15412800	Enhancers	Duodenum Mucosa	Duodenum
32	chr4:15412200-15412800	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr4:15412200-15413000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr4:15412200-15413200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr4:15412200-15413200	Enhancers	Stomach Smooth Muscle	stomach
36	chr4:15412200-15413400	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr4:15412200-15413400	Enhancers	Fetal Stomach	stomach
38	chr4:15412200-15416400	Enhancers	Fetal Thymus	thymus
39	chr4:15412400-15412800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:15412400-15412800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr4:15412400-15412800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr4:15412400-15412800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr4:15412400-15412800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr4:15412400-15412800	Flanking Active TSS	Fetal Lung	lung
45	chr4:15412400-15413000	Weak transcription	Right Atrium	heart
46	chr4:15412400-15413000	Enhancers	HUVEC	blood vessel
47	chr4:15412400-15413200	Enhancers	Ovary	ovary
48	chr4:15412400-15413200	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr4:15412400-15416400	Enhancers	Thymus	Thymus
50	chr4:15412400-15421800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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