Variant report

Variant	rs35866319
Chromosome Location	chr4:15418916-15418917
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11722737	0.89[AFR][1000 genomes]
rs11737539	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13108525	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132762	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146183	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149679	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150862	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152775	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17384915	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17385047	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469433	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469572	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469634	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469704	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2110362	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192358	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2314588	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2314590	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2872669	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971067	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35132992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62289263	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733388	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961588	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15405400-15422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:15411200-15419800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:15412400-15421800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:15412600-15421800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:15412800-15420800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:15413000-15419400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:15416400-15419000	Weak transcription	Adipose Nuclei	Adipose
8	chr4:15416400-15419400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:15416600-15419200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:15416800-15421800	Weak transcription	NHLF	lung
11	chr4:15416800-15422000	Weak transcription	Brain Substantia Nigra	brain
12	chr4:15416800-15422000	Weak transcription	HSMMtube	muscle
13	chr4:15416800-15422000	Weak transcription	NH-A	brain
14	chr4:15416800-15429000	Weak transcription	Fetal Lung	lung
15	chr4:15417000-15419200	Weak transcription	Fetal Stomach	stomach
16	chr4:15417000-15421800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:15417000-15421800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:15417000-15421800	Weak transcription	HSMM	muscle
19	chr4:15417000-15421800	Weak transcription	Osteobl	bone
20	chr4:15417800-15420400	Enhancers	Stomach Smooth Muscle	stomach
21	chr4:15418000-15419400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr4:15418000-15423200	Enhancers	Ovary	ovary
23	chr4:15418200-15419800	Weak transcription	Placenta	Placenta
24	chr4:15418200-15423200	Enhancers	Colon Smooth Muscle	Colon
25	chr4:15418400-15419600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:15418400-15419800	Enhancers	Primary B cells from peripheral blood	blood
27	chr4:15418400-15422600	Weak transcription	Right Atrium	heart
28	chr4:15418600-15419000	Weak transcription	Aorta	Aorta
29	chr4:15418600-15419200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr4:15418600-15419600	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr4:15418600-15420000	Enhancers	Primary B cells from cord blood	blood
32	chr4:15418600-15421600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:15418800-15419000	Enhancers	Rectal Smooth Muscle	rectum
34	chr4:15418800-15419400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links