Variant report

Variant	rs34971067
Chromosome Location	chr4:15409280-15409281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11737539	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13108525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132762	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146183	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149679	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150862	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152775	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17384915	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17385047	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469433	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469572	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469634	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469704	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2110362	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192358	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2314588	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2314590	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2872669	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35132992	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866319	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62289263	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733388	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961588	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15403200-15411200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:15403200-15411200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:15403200-15412400	Weak transcription	Thymus	Thymus
4	chr4:15403600-15411200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:15403800-15411600	Weak transcription	Fetal Thymus	thymus
6	chr4:15404000-15411400	Weak transcription	Fetal Lung	lung
7	chr4:15404000-15414800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:15404000-15415600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:15404200-15411400	Weak transcription	Dnd41	blood
10	chr4:15405200-15411600	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:15405200-15412200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:15405400-15410400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr4:15405400-15411600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:15405400-15416000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:15405400-15422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:15406400-15414800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:15406600-15411400	Weak transcription	Primary T cells from cord blood	blood
18	chr4:15406600-15412200	Weak transcription	NHDF-Ad	bronchial
19	chr4:15406800-15412200	Weak transcription	NHLF	lung
20	chr4:15407000-15412400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:15407600-15411200	Weak transcription	Aorta	Aorta
22	chr4:15407600-15411400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:15407600-15418000	Weak transcription	Left Ventricle	heart
24	chr4:15407800-15411200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:15408000-15410400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr4:15408000-15411600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:15408200-15409400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr4:15408200-15411000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr4:15408200-15411200	Weak transcription	Primary B cells from cord blood	blood
30	chr4:15408200-15411200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr4:15408200-15413000	Weak transcription	Spleen	Spleen
32	chr4:15408400-15411200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:15409200-15411200	Weak transcription	Primary monocytes fromperipheralblood	blood

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