Variant report

Variant	rs62289263
Chromosome Location	chr4:15397741-15397742
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:15232848..15233383-chr4:15397538..15398458,2	K562	blood:
2	chr4:15240072..15240605-chr4:15397706..15398291,2	K562	blood:
3	chr4:15396902..15399752-chr4:15401577..15403886,2	K562	blood:
4	chr4:15329709..15330339-chr4:15397138..15397947,2	MCF-7	breast:
5	chr4:15240032..15240900-chr4:15397622..15398796,7	MCF-7	breast:
6	chr4:15386891..15389601-chr4:15395549..15397973,3	K562	blood:
7	chr4:15232817..15233793-chr4:15397547..15398050,2	MCF-7	breast:
8	chr4:14958119..14958621-chr4:15397558..15398278,2	K562	blood:
9	chr4:15397612..15398426-chr4:15651683..15652206,2	K562	blood:
10	chr4:15239996..15241022-chr4:15397404..15398151,4	MCF-7	breast:

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11737539	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13108525	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132762	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146183	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149679	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150862	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152775	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17384915	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17385047	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469433	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469572	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469634	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469704	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2110362	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192358	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2314588	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2314590	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2872669	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971067	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35132992	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866319	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733388	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961588	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15378600-15401200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15384400-15402000	Weak transcription	Fetal Lung	lung
3	chr4:15388200-15400000	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:15388400-15401800	Weak transcription	Fetal Stomach	stomach
5	chr4:15394200-15397800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:15394200-15400000	Weak transcription	Lung	lung
7	chr4:15394400-15401600	Weak transcription	HSMMtube	muscle
8	chr4:15394400-15402400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:15396000-15397800	Weak transcription	Aorta	Aorta
10	chr4:15396000-15398000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:15396800-15398000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:15396800-15398000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:15396800-15398000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:15397000-15402200	Weak transcription	Right Atrium	heart
15	chr4:15397200-15398000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:15397600-15397800	Enhancers	Fetal Muscle Trunk	muscle
17	chr4:15397600-15397800	Enhancers	Stomach Smooth Muscle	stomach
18	chr4:15397600-15398000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:15397600-15398000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:15397600-15399000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:15397600-15399400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:15397600-15399600	Weak transcription	Ovary	ovary
23	chr4:15397600-15399800	Weak transcription	Osteobl	bone
24	chr4:15397600-15400600	Weak transcription	Fetal Kidney	kidney

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