Variant report

Variant	rs17469433
Chromosome Location	chr4:15422830-15422831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11737539	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12500458	0.85[CHB][hapmap]
rs13108525	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131700	0.85[CHB][hapmap]
rs13132762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146183	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149679	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150862	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152775	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17384915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17385047	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469572	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469634	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469704	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2110362	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192358	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2314588	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2314590	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2872669	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971067	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35132992	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35866319	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62289263	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733388	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961588	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15416800-15429000	Weak transcription	Fetal Lung	lung
2	chr4:15418000-15423200	Enhancers	Ovary	ovary
3	chr4:15418200-15423200	Enhancers	Colon Smooth Muscle	Colon
4	chr4:15419000-15428600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:15419800-15428600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:15420800-15428800	Weak transcription	Fetal Stomach	stomach
7	chr4:15421400-15423800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:15421600-15423200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:15421800-15423000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:15421800-15423000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:15421800-15423000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:15421800-15423000	Enhancers	Brain Anterior Caudate	brain
13	chr4:15421800-15423000	Enhancers	HSMM	muscle
14	chr4:15421800-15423200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr4:15421800-15423200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:15421800-15423200	Enhancers	Brain Cingulate Gyrus	brain
17	chr4:15421800-15423200	Enhancers	Brain Hippocampus Middle	brain
18	chr4:15421800-15423200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr4:15421800-15423200	Enhancers	Stomach Smooth Muscle	stomach
20	chr4:15422000-15423000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr4:15422000-15423200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr4:15422000-15423200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:15422000-15423200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr4:15422000-15423200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:15422000-15423200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr4:15422000-15423200	Enhancers	HSMMtube	muscle
27	chr4:15422400-15423400	Enhancers	Aorta	Aorta
28	chr4:15422600-15423200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:15422800-15423200	Weak transcription	Right Atrium	heart
30	chr4:15422800-15423400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr4:15422800-15425200	Weak transcription	HMEC	breast

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