Variant report
Variant | rs11728755 |
---|---|
Chromosome Location | chr4:80480457-80480458 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10004226 | 0.92[ASN][1000 genomes] |
rs10022309 | 0.84[ASN][1000 genomes] |
rs10022314 | 0.84[ASN][1000 genomes] |
rs10022663 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10025630 | 0.84[ASN][1000 genomes] |
rs10033410 | 0.84[ASN][1000 genomes] |
rs1031004 | 0.87[ASN][1000 genomes] |
rs1031005 | 0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11098741 | 0.84[ASN][1000 genomes] |
rs11098742 | 0.84[ASN][1000 genomes] |
rs11098762 | 0.92[ASN][1000 genomes] |
rs11098764 | 0.92[ASN][1000 genomes] |
rs11098766 | 0.92[ASN][1000 genomes] |
rs11098770 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11736369 | 0.94[ASN][1000 genomes] |
rs11941782 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12500146 | 0.92[ASN][1000 genomes] |
rs12502224 | 0.84[ASN][1000 genomes] |
rs12507160 | 0.92[ASN][1000 genomes] |
rs12507375 | 0.92[ASN][1000 genomes] |
rs12510204 | 0.84[ASN][1000 genomes] |
rs12510243 | 0.84[ASN][1000 genomes] |
rs12511646 | 0.92[ASN][1000 genomes] |
rs12513177 | 0.84[ASN][1000 genomes] |
rs12639996 | 0.84[ASN][1000 genomes] |
rs12640638 | 0.84[ASN][1000 genomes] |
rs12643491 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12643976 | 0.88[ASN][1000 genomes] |
rs13104009 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs13112067 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13112577 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13124357 | 0.88[ASN][1000 genomes] |
rs13127970 | 0.89[ASN][1000 genomes] |
rs13128134 | 0.84[ASN][1000 genomes] |
rs13129838 | 0.81[ASN][1000 genomes] |
rs13142610 | 0.86[ASN][1000 genomes] |
rs13144408 | 0.88[ASN][1000 genomes] |
rs13146986 | 0.87[ASN][1000 genomes] |
rs1348086 | 0.86[ASN][1000 genomes] |
rs1371989 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1371993 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1371996 | 0.84[ASN][1000 genomes] |
rs1440852 | 0.92[ASN][1000 genomes] |
rs1440853 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1440854 | 0.92[ASN][1000 genomes] |
rs1440864 | 0.92[ASN][1000 genomes] |
rs1440865 | 0.84[ASN][1000 genomes] |
rs1440866 | 0.84[ASN][1000 genomes] |
rs1595966 | 0.84[ASN][1000 genomes] |
rs17003985 | 0.86[ASN][1000 genomes] |
rs1837645 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1837646 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1837647 | 0.86[ASN][1000 genomes] |
rs1866835 | 0.85[EUR][1000 genomes] |
rs1975399 | 0.92[ASN][1000 genomes] |
rs1992367 | 0.82[ASN][1000 genomes] |
rs2119421 | 0.82[ASN][1000 genomes] |
rs2165386 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2165387 | 0.94[ASN][1000 genomes] |
rs2165388 | 0.84[ASN][1000 genomes] |
rs2582681 | 0.87[EUR][1000 genomes] |
rs2709847 | 0.87[EUR][1000 genomes] |
rs2903640 | 0.85[ASN][1000 genomes] |
rs35487709 | 0.86[ASN][1000 genomes] |
rs35631270 | 0.86[ASN][1000 genomes] |
rs3943669 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4389603 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4443312 | 0.83[ASN][1000 genomes] |
rs4975053 | 0.84[ASN][1000 genomes] |
rs4975054 | 0.84[ASN][1000 genomes] |
rs4975055 | 0.84[ASN][1000 genomes] |
rs4975056 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4975057 | 0.94[ASN][1000 genomes] |
rs4975097 | 0.87[ASN][1000 genomes] |
rs62297619 | 0.80[EUR][1000 genomes] |
rs62297620 | 0.80[EUR][1000 genomes] |
rs6812760 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6850999 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6852514 | 0.92[ASN][1000 genomes] |
rs71629061 | 0.84[ASN][1000 genomes] |
rs7667469 | 0.92[ASN][1000 genomes] |
rs7688923 | 0.80[EUR][1000 genomes] |
rs7697359 | 0.84[ASN][1000 genomes] |
rs894054 | 0.87[EUR][1000 genomes] |
rs894055 | 0.87[EUR][1000 genomes] |
rs9307545 | 0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9307551 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs968176 | 0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv999174 | chr4:80212935-80512356 | Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv879506 | chr4:80316417-80604625 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv879507 | chr4:80365765-80552199 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv879508 | chr4:80398708-80552199 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv1002031 | chr4:80459528-80759113 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:80467600-80485600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
2 | chr4:80474200-80481600 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
3 | chr4:80476600-80480600 | Active TSS | iPS-15b Cell Line | embryonic stem cell |
4 | chr4:80476600-80480800 | Active TSS | HUES6 Cell Line | embryonic stem cell |
5 | chr4:80477800-80481000 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
6 | chr4:80478200-80480600 | Active TSS | iPS DF 19.11 Cell Line | embryonic stem cell |
7 | chr4:80478200-80481000 | Active TSS | HUES64 Cell Line | embryonic stem cell |
8 | chr4:80480000-80480800 | Active TSS | H1 Cell Line | embryonic stem cell |
9 | chr4:80480400-80481800 | Weak transcription | H9 Cell Line | embryonic stem cell |