Variant report

Variant	rs71629061
Chromosome Location	chr13:66804465-66804466
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10004226	0.85[ASN][1000 genomes]
rs10022663	0.85[ASN][1000 genomes]
rs11098762	0.85[ASN][1000 genomes]
rs11098764	0.85[ASN][1000 genomes]
rs11098766	0.85[ASN][1000 genomes]
rs11728755	0.84[ASN][1000 genomes]
rs11736369	0.88[ASN][1000 genomes]
rs11941782	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12500146	0.85[ASN][1000 genomes]
rs12507160	0.85[ASN][1000 genomes]
rs12507375	0.85[ASN][1000 genomes]
rs12511646	0.85[ASN][1000 genomes]
rs12643976	0.81[ASN][1000 genomes]
rs13112067	0.88[ASN][1000 genomes]
rs13112577	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13124357	0.81[ASN][1000 genomes]
rs13127970	0.83[ASN][1000 genomes]
rs13144408	0.82[ASN][1000 genomes]
rs13146986	0.82[ASN][1000 genomes]
rs1371993	0.88[ASN][1000 genomes]
rs1440852	0.85[ASN][1000 genomes]
rs1440853	0.85[ASN][1000 genomes]
rs1440854	0.85[ASN][1000 genomes]
rs1440864	0.85[ASN][1000 genomes]
rs1837645	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1837646	0.88[ASN][1000 genomes]
rs1837647	0.81[ASN][1000 genomes]
rs1975399	0.85[ASN][1000 genomes]
rs2165386	0.85[ASN][1000 genomes]
rs2165387	0.86[ASN][1000 genomes]
rs4389603	0.85[ASN][1000 genomes]
rs4975056	0.87[ASN][1000 genomes]
rs4975057	0.85[ASN][1000 genomes]
rs4975097	0.80[ASN][1000 genomes]
rs6812760	0.88[ASN][1000 genomes]
rs6850999	0.85[ASN][1000 genomes]
rs6852514	0.85[ASN][1000 genomes]
rs7667469	0.85[ASN][1000 genomes]
rs968176	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047991	chr13:65982529-66931617	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv530416	chr13:66198235-67126195	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1053763	chr13:66210166-67184972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv541811	chr13:66210166-67184972	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv932195	chr13:66215786-67215733	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv530723	chr13:66219650-67200316	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1052017	chr13:66232288-67213033	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv534503	chr13:66287963-67126195	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv915828	chr13:66544825-67212201	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv1041133	chr13:66723731-67530595	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv900387	chr13:66725708-66863184	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
12	nsv562097	chr13:66791133-66843296	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
13	nsv900388	chr13:66798923-66919700	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:66803600-66805000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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