Variant report

Variant	rs11736369
Chromosome Location	chr1:216319718-216319719
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10004226	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10022309	0.85[ASN][1000 genomes]
rs10022314	0.85[ASN][1000 genomes]
rs10022663	0.94[ASN][1000 genomes]
rs10025630	0.85[ASN][1000 genomes]
rs10033410	0.85[ASN][1000 genomes]
rs1031004	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1031005	0.87[ASN][1000 genomes]
rs11098741	0.85[ASN][1000 genomes]
rs11098742	0.85[ASN][1000 genomes]
rs11098762	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098764	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098766	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098770	0.87[ASN][1000 genomes]
rs11728755	0.94[ASN][1000 genomes]
rs11941782	0.97[ASN][1000 genomes]
rs12500146	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12501981	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12502224	0.85[ASN][1000 genomes]
rs12507160	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12507375	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12510204	0.85[ASN][1000 genomes]
rs12510243	0.85[ASN][1000 genomes]
rs12511646	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12513177	0.85[ASN][1000 genomes]
rs12639996	0.85[ASN][1000 genomes]
rs12640638	0.85[ASN][1000 genomes]
rs12643491	0.87[ASN][1000 genomes]
rs12643976	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13104009	0.87[ASN][1000 genomes]
rs13112067	0.97[ASN][1000 genomes]
rs13112577	0.97[ASN][1000 genomes]
rs13124357	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13127970	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13128134	0.85[ASN][1000 genomes]
rs13129838	0.82[ASN][1000 genomes]
rs13142610	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13144408	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13146986	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1348086	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1371989	0.87[ASN][1000 genomes]
rs1371993	0.97[ASN][1000 genomes]
rs1371996	0.85[ASN][1000 genomes]
rs1440852	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1440853	0.93[ASN][1000 genomes]
rs1440854	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1440864	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1440865	0.85[ASN][1000 genomes]
rs1440866	0.85[ASN][1000 genomes]
rs1595966	0.85[ASN][1000 genomes]
rs17003985	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1837645	0.97[ASN][1000 genomes]
rs1837646	0.97[ASN][1000 genomes]
rs1837647	0.87[ASN][1000 genomes]
rs1975399	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1992367	0.83[ASN][1000 genomes]
rs2119421	0.83[ASN][1000 genomes]
rs2165386	0.93[ASN][1000 genomes]
rs2165387	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2165388	0.85[ASN][1000 genomes]
rs2196978	0.84[EUR][1000 genomes]
rs2867672	0.81[ASN][1000 genomes]
rs2903640	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35487709	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35631270	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3943669	0.87[ASN][1000 genomes]
rs4389603	0.94[ASN][1000 genomes]
rs4443312	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4583785	0.82[EUR][1000 genomes]
rs4975053	0.85[ASN][1000 genomes]
rs4975054	0.85[ASN][1000 genomes]
rs4975055	0.85[ASN][1000 genomes]
rs4975056	0.96[ASN][1000 genomes]
rs4975057	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4975097	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6812760	0.97[ASN][1000 genomes]
rs6850999	0.93[ASN][1000 genomes]
rs6852514	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71629061	0.88[ASN][1000 genomes]
rs7667469	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7697359	0.85[ASN][1000 genomes]
rs9307545	0.87[ASN][1000 genomes]
rs9307551	0.87[ASN][1000 genomes]
rs968176	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv873176	chr1:216249570-216363137	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv999211	chr1:216268796-216329336	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1006028	chr1:216268796-216432545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216315000-216324000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:216318800-216326000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:216318800-216326200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:216318800-216330400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:216319000-216320600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr1:216319000-216322200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:216319000-216326400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:216319400-216319800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:216319600-216319800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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