Variant report

Variant	rs1172954
Chromosome Location	chr10:97877549-97877550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97862903..97865419-chr10:97876280..97877825,2	K562	blood:
2	chr10:97875753..97878264-chr10:97885533..97887892,2	MCF-7	breast:
3	chr10:97848457..97851252-chr10:97877480..97882183,4	MCF-7	breast:
4	chr10:97871710..97874019-chr10:97877046..97879264,2	MCF-7	breast:
5	chr10:97871595..97874047-chr10:97875206..97878090,4	K562	blood:
6	chr10:97863872..97865419-chr10:97876280..97878249,2	K562	blood:
7	chr10:97871721..97873820-chr10:97875416..97878062,2	K562	blood:
8	chr10:97875384..97878140-chr10:97888337..97891215,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11188585	0.83[AMR][1000 genomes]
rs1172952	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1344356	0.81[AMR][1000 genomes]
rs1414918	0.84[AMR][1000 genomes]
rs1624551	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7099399	0.84[AMR][1000 genomes]
rs7475754	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97876600-97878200	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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