Variant report

Variant	rs7475754
Chromosome Location	chr10:97853976-97853977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:97853835-97854219	HepG2	liver:	n/a	n/a
2	FOXA1	chr10:97853525-97854242	HepG2	liver:	n/a	n/a
3	CEBPB	chr10:97853725-97854018	HepG2	liver:	n/a	n/a
4	HEY1	chr10:97853664-97854008	HepG2	liver:	n/a	n/a
5	HEY1	chr10:97853710-97853978	HepG2	liver:	n/a	n/a
6	FOXA2	chr10:97853671-97854084	HepG2	liver:	n/a	n/a
7	EP300	chr10:97853628-97854060	K562	blood:	n/a	n/a
8	FOXA1	chr10:97853790-97853976	T-47D	breast:	n/a	n/a
9	FOXA1	chr10:97853575-97854178	HepG2	liver:	n/a	n/a
10	EP300	chr10:97853710-97854056	HepG2	liver:	n/a	n/a
11	FOXA1	chr10:97853617-97854137	HepG2	liver:	n/a	n/a
12	FOXA1	chr10:97853540-97854153	HepG2	liver:	n/a	n/a
13	FOXA2	chr10:97852763-97854545	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
2	chr10:97848458..97851464-chr10:97851557..97854751,6	MCF-7	breast:
3	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
4	chr10:97848249..97852807-chr10:97853294..97857054,6	MCF-7	breast:
5	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

No data

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10128368	0.98[ASN][1000 genomes]
rs1029215	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10732776	0.98[ASN][1000 genomes]
rs10748659	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11188585	0.89[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.89[TSI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1172943	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[ASN][1000 genomes]
rs1172946	0.97[ASN][1000 genomes]
rs1172952	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1172953	0.83[ASN][1000 genomes]
rs1172954	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1172958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1172963	0.94[ASN][1000 genomes]
rs1344356	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1414918	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1414919	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1624551	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1889921	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2901894	0.98[ASN][1000 genomes]
rs3762090	0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7084542	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7099399	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs747259	0.85[CHD][hapmap]
rs7901611	0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7475754	CRTAC1	cis	parietal	SCAN
rs7475754	ALDH18A1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97852600-97854000	Flanking Active TSS	HepG2	liver
2	chr10:97852800-97854600	Enhancers	K562	blood

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