Variant report
Variant | rs1172953 |
---|---|
Chromosome Location | chr10:97877582-97877583 |
allele | A/G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:8 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:97862903..97865419-chr10:97876280..97877825,2 | K562 | blood: | |
2 | chr10:97875753..97878264-chr10:97885533..97887892,2 | MCF-7 | breast: | |
3 | chr10:97848457..97851252-chr10:97877480..97882183,4 | MCF-7 | breast: | |
4 | chr10:97871710..97874019-chr10:97877046..97879264,2 | MCF-7 | breast: | |
5 | chr10:97871595..97874047-chr10:97875206..97878090,4 | K562 | blood: | |
6 | chr10:97863872..97865419-chr10:97876280..97878249,2 | K562 | blood: | |
7 | chr10:97871721..97873820-chr10:97875416..97878062,2 | K562 | blood: | |
8 | chr10:97875384..97878140-chr10:97888337..97891215,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000177853 | Chromatin interaction |
ENSG00000226688 | Chromatin interaction |
ENSG00000200728 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10128368 | 0.83[ASN][1000 genomes] |
rs1029215 | 0.80[ASN][1000 genomes] |
rs10732776 | 0.83[ASN][1000 genomes] |
rs10748659 | 0.81[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs11188585 | 0.82[ASN][1000 genomes] |
rs1172943 | 0.86[ASN][1000 genomes] |
rs1172946 | 0.86[ASN][1000 genomes] |
rs1172952 | 0.87[ASN][1000 genomes] |
rs1172958 | 0.86[ASN][1000 genomes] |
rs1172963 | 0.87[ASN][1000 genomes] |
rs1344356 | 0.82[ASN][1000 genomes] |
rs1414918 | 0.81[ASN][1000 genomes] |
rs1414919 | 0.81[ASN][1000 genomes] |
rs1624551 | 0.81[ASN][1000 genomes] |
rs2901894 | 0.83[ASN][1000 genomes] |
rs3762090 | 0.87[ASN][1000 genomes] |
rs7084542 | 0.83[ASN][1000 genomes] |
rs7099399 | 0.80[ASN][1000 genomes] |
rs7475754 | 0.83[ASN][1000 genomes] |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:97876600-97878200 | Weak transcription | HepG2 | liver |