Variant report

Variant	rs7099399
Chromosome Location	chr10:97816420-97816421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97802695..97805462-chr10:97811837..97816775,5	MCF-7	breast:
2	chr10:97814069..97816928-chr10:97887752..97890391,4	K562	blood:
3	chr10:97812701..97816784-chr10:97818025..97820813,5	K562	blood:
4	chr10:97814860..97816928-chr10:97888510..97890391,3	K562	blood:
5	chr10:97800626..97807538-chr10:97808400..97818452,20	K562	blood:
6	chr10:97803328..97806742-chr10:97815261..97819253,4	K562	blood:
7	chr10:97802667..97805109-chr10:97816147..97818756,3	MCF-7	breast:
8	chr10:97814888..97816986-chr10:97899408..97902001,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10128368	0.97[ASN][1000 genomes]
rs1029215	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10732776	0.97[ASN][1000 genomes]
rs10748659	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[ASN][1000 genomes]
rs11188585	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1172943	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1172946	0.94[ASN][1000 genomes]
rs1172952	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1172953	0.80[ASN][1000 genomes]
rs1172954	0.84[AMR][1000 genomes]
rs1172958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1172963	0.91[ASN][1000 genomes]
rs1344356	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1414918	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1414919	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1624551	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1889921	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2901894	0.97[ASN][1000 genomes]
rs3762090	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7084542	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs747259	0.82[CHD][hapmap]
rs7475754	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7901611	0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7099399	CRTAC1	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97804400-97816600	Weak transcription	Esophagus	oesophagus
2	chr10:97804600-97816600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:97804600-97816600	Weak transcription	Placenta	Placenta
4	chr10:97804600-97816600	Weak transcription	Gastric	stomach
5	chr10:97804600-97816800	Weak transcription	Ovary	ovary
6	chr10:97804600-97817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:97804600-97817000	Weak transcription	Aorta	Aorta
8	chr10:97804600-97817000	Weak transcription	Psoas Muscle	Psoas
9	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
10	chr10:97804800-97824200	Weak transcription	Small Intestine	intestine
11	chr10:97805000-97816600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:97805000-97816600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:97805000-97816600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:97805000-97816600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:97805000-97816600	Weak transcription	Fetal Stomach	stomach
16	chr10:97805000-97816600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:97805000-97816800	Weak transcription	Brain Angular Gyrus	brain
18	chr10:97805000-97816800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:97805000-97816800	Weak transcription	Colonic Mucosa	Colon
20	chr10:97805000-97816800	Weak transcription	Right Ventricle	heart
21	chr10:97805000-97816800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:97805000-97816800	Weak transcription	Osteobl	bone
23	chr10:97805000-97817000	Weak transcription	Brain Substantia Nigra	brain
24	chr10:97805000-97817000	Weak transcription	Fetal Intestine Small	intestine
25	chr10:97805000-97817400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:97805000-97817600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:97805000-97825600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:97805200-97816600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:97805200-97816600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:97805200-97816600	Weak transcription	Brain Anterior Caudate	brain
31	chr10:97805200-97816600	Weak transcription	NHLF	lung
32	chr10:97805200-97816800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:97805200-97816800	Weak transcription	HMEC	breast
34	chr10:97805400-97816600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr10:97805400-97816800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:97805400-97817000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:97805400-97817000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:97805400-97817600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr10:97805400-97822800	Weak transcription	Hela-S3	cervix
40	chr10:97805800-97822600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:97806200-97816600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:97806200-97822200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:97806200-97822400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:97806400-97817600	Weak transcription	Fetal Heart	heart
45	chr10:97806600-97821200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:97806800-97822600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:97807000-97816800	Weak transcription	Pancreas	Pancrea
48	chr10:97807000-97817200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:97807000-97822400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:97807000-97823000	Strong transcription	Primary monocytes fromperipheralblood	blood

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