Variant report

Variant	rs747259
Chromosome Location	chr10:97967269-97967270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97966847-97967415	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:97966885-97967300	GM12891	blood:	n/a	n/a
3	POLR2A	chr10:97966939-97967479	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97962950..97964971-chr10:97965683..97967734,2	MCF-7	breast:

Variant related genes	Relation type
BLNK	TF binding region
ENSG00000095585	Chromatin interaction

rs_ID	r²[population]
rs11188585	0.85[CHD][hapmap]
rs11188663	0.92[ASN][1000 genomes]
rs12776881	0.91[ASN][1000 genomes]
rs1414918	0.85[CHD][hapmap]
rs3762090	0.83[CHB][hapmap]
rs7088458	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7099399	0.82[CHD][hapmap]
rs7475754	0.85[CHD][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs747259	ALDH18A1	cis	cerebellum	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:97948600-97969400	Weak transcription	Fetal Stomach	stomach
4	chr10:97949600-97989200	Strong transcription	Liver	Liver
5	chr10:97950000-97969400	Weak transcription	Esophagus	oesophagus
6	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
7	chr10:97952200-97971800	Strong transcription	Primary B cells from cord blood	blood
8	chr10:97953600-97967800	Strong transcription	GM12878-XiMat	blood
9	chr10:97955400-97971800	Strong transcription	Primary B cells from peripheral blood	blood
10	chr10:97957600-97988400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:97958800-97971400	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:97958800-97976400	Strong transcription	Fetal Intestine Large	intestine
13	chr10:97959000-97988800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:97959800-97968000	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr10:97960400-97967800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:97961000-97985600	Weak transcription	Aorta	Aorta
17	chr10:97962400-97970200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:97963400-97967600	Strong transcription	Spleen	Spleen
19	chr10:97964000-97985800	Weak transcription	Stomach Mucosa	stomach
20	chr10:97965600-97974200	Weak transcription	Lung	lung
21	chr10:97965800-97998600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:97966400-97968400	Strong transcription	Placenta	Placenta
23	chr10:97967000-97967400	Strong transcription	Adipose Nuclei	Adipose
24	chr10:97967000-97967400	Strong transcription	Colonic Mucosa	Colon
25	chr10:97967000-97967400	Strong transcription	Gastric	stomach
26	chr10:97967000-97968200	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr10:97967000-97976000	Strong transcription	Fetal Intestine Small	intestine
28	chr10:97967200-97967400	Genic enhancers	Pancreas	Pancrea
29	chr10:97967200-97967600	Strong transcription	Rectal Smooth Muscle	rectum
30	chr10:97967200-97977000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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