Variant report

Variant	rs1889921
Chromosome Location	chr10:97803997-97803998
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr10:97802992-97804167	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr10:97802810-97804161	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr10:97802840-97804445	GM12892	blood:	n/a	n/a
4	YY1	chr10:97802793-97804352	HepG2	liver:	n/a	chr10:97803186-97803195 chr10:97803214-97803228 chr10:97803528-97803539 chr10:97803189-97803198
5	POLR2A	chr10:97802823-97804594	H1-neurons	neurons:	n/a	n/a
6	POLR2A	chr10:97803662-97804272	HUVEC	blood vessel:	n/a	n/a
7	POLR2A	chr10:97802946-97804285	K562	blood:	n/a	n/a
8	POLR2A	chr10:97803978-97804010	GM12878	blood:	n/a	n/a
9	CREB1	chr10:97803849-97804358	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr10:97803633-97804117	GM12891	blood:	n/a	n/a
11	BCLAF1	chr10:97802801-97804116	GM12878	blood:	n/a	chr10:97803177-97803190 chr10:97803183-97803192 chr10:97803496-97803509 chr10:97803188-97803197 chr10:97803497-97803510 chr10:97803189-97803202
12	YY1	chr10:97803786-97804321	GM12892	blood:	n/a	n/a
13	MAZ	chr10:97802912-97804109	GM12878	blood:	n/a	chr10:97803523-97803532
14	POLR2A	chr10:97802963-97804295	HepG2	liver:	n/a	n/a
15	CREB1	chr10:97802962-97804268	GM12878	blood:	n/a	n/a
16	POLR2A	chr10:97802912-97804197	GM12878	blood:	n/a	n/a
17	POLR2A	chr10:97802946-97804640	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr10:97802839-97804295	HEK293	kidney:	n/a	n/a
19	REST	chr10:97802490-97804714	H1-neurons	neurons:	n/a	chr10:97803739-97803752 chr10:97802850-97802863 chr10:97803828-97803841
20	REST	chr10:97802976-97804133	HL-60	blood:	n/a	chr10:97803739-97803752 chr10:97803828-97803841
21	MAZ	chr10:97802941-97804972	IMR90	lung:	n/a	chr10:97803523-97803532
22	TBP	chr10:97802973-97804402	K562	blood:	n/a	n/a
23	EP300	chr10:97802729-97804387	ECC-1	luminal epithelium:	n/a	chr10:97803191-97803207 chr10:97803203-97803219
24	POLR2A	chr10:97802766-97804381	ECC-1	luminal epithelium:	n/a	n/a
25	MYC	chr10:97802589-97804207	K562	blood:	n/a	chr10:97803523-97803532
26	POLR2A	chr10:97802895-97804333	GM18505	blood:	n/a	n/a
27	POLR2A	chr10:97802865-97804295	K562	blood:	n/a	n/a
28	FOS	chr10:97803863-97804085	HUVEC	blood vessel:	n/a	n/a
29	POLR2A	chr10:97802967-97804345	K562	blood:	n/a	n/a
30	POLR2A	chr10:97803832-97804534	SK-N-MC	brain:	n/a	n/a
31	POLR2A	chr10:97803639-97804122	GM12878	blood:	n/a	n/a
32	MAX	chr10:97802584-97804339	A549	lung:	n/a	chr10:97803523-97803532
33	HCFC1	chr10:97802333-97804425	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr10:97802868-97804730	HepG2	liver:	n/a	n/a
35	CHD1	chr10:97802643-97804072	GM12878	blood:	n/a	chr10:97803258-97803267 chr10:97803175-97803185
36	POLR2A	chr10:97802737-97804977	MCF10A-Er-Src	breast:	n/a	n/a
37	MAX	chr10:97802809-97804273	K562	blood:	n/a	chr10:97803523-97803532
38	POLR2A	chr10:97802867-97804118	Raji	blood:	n/a	n/a
39	TAF1	chr10:97803095-97804070	GM12878	blood:	n/a	n/a
40	POLR2A	chr10:97802730-97804453	GM12892	blood:	n/a	n/a
41	POLR2A	chr10:97802932-97804230	GM18526	blood:	n/a	n/a
42	MAX	chr10:97802655-97804045	SK-N-SH	brain:	n/a	chr10:97803523-97803532
43	POLR2A	chr10:97802898-97804362	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr10:97802784-97804481	GM12892	blood:	n/a	n/a
45	CCNT2	chr10:97802862-97804251	K562	blood:	n/a	n/a
46	MYC	chr10:97802924-97804980	K562	blood:	n/a	chr10:97804737-97804747 chr10:97803523-97803532
47	POLR2A	chr10:97802758-97804459	H1-neurons	neurons:	n/a	n/a
48	SIN3A	chr10:97802840-97804918	H1-hESC	embryonic stem cell:	n/a	chr10:97803197-97803206 chr10:97803097-97803108
49	POLR2A	chr10:97802926-97804734	GM12891	blood:	n/a	n/a
50	POLR2A	chr10:97802920-97804027	PFSK-1	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97807548-chr10:97886918..97893342,17	K562	blood:
2	chr10:97803734..97806722-chr10:97959272..97960926,2	K562	blood:
3	chr10:97665969..97667709-chr10:97802060..97805145,4	MCF-7	breast:
4	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
5	chr10:97802278..97809202-chr10:97887978..97892462,12	MCF-7	breast:
6	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
7	chr10:97803257..97805604-chr10:97849531..97852092,3	MCF-7	breast:
8	chr10:97802832..97806993-chr10:97887536..97891956,8	MCF-7	breast:
9	chr10:97803632..97805225-chr10:97927626..97930343,2	K562	blood:
10	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:
11	chr10:97803583..97805560-chr10:98074679..98076235,2	MCF-7	breast:

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
ENSG00000173088	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1047370	0.86[ASN][1000 genomes]
rs10786262	0.85[ASN][1000 genomes]
rs10882714	0.86[ASN][1000 genomes]
rs10882716	0.84[ASN][1000 genomes]
rs10882717	0.84[ASN][1000 genomes]
rs11188585	0.90[EUR][1000 genomes]
rs11188594	0.82[ASN][1000 genomes]
rs1172952	0.88[EUR][1000 genomes]
rs1336455	0.84[ASN][1000 genomes]
rs1344356	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1414918	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1624551	0.88[EUR][1000 genomes]
rs7099399	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7475754	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7913418	0.89[ASN][1000 genomes]
rs915506	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3372441	chr10:97802187-97804735	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97802400-97804200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:97802400-97804200	Active TSS	Brain Anterior Caudate	brain
3	chr10:97802400-97804400	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr10:97802600-97804200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:97802600-97804200	Active TSS	Brain Substantia Nigra	brain
6	chr10:97802600-97804200	Active TSS	Fetal Heart	heart
7	chr10:97802600-97804400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:97802600-97804400	Active TSS	Brain Cingulate Gyrus	brain
9	chr10:97802600-97804400	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr10:97802600-97804400	Active TSS	Fetal Kidney	kidney
11	chr10:97802600-97804600	Active TSS	Fetal Brain Female	brain
12	chr10:97802600-97804800	Active TSS	Fetal Brain Male	brain
13	chr10:97802600-97804800	Active TSS	A549	lung
14	chr10:97802600-97805000	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr10:97802600-97805000	Active TSS	Right Atrium	heart
16	chr10:97802600-97805200	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr10:97802600-97805200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:97802600-97805200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:97802600-97805800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:97802800-97804200	Active TSS	Liver	Liver
21	chr10:97802800-97804200	Active TSS	Brain Hippocampus Middle	brain
22	chr10:97802800-97804400	Active TSS	Psoas Muscle	Psoas
23	chr10:97802800-97804600	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr10:97802800-97804600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:97802800-97804600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:97802800-97804600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:97802800-97804600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:97802800-97804600	Active TSS	Aorta	Aorta
29	chr10:97802800-97804600	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr10:97802800-97804600	Active TSS	Gastric	stomach
31	chr10:97802800-97804600	Active TSS	Left Ventricle	heart
32	chr10:97802800-97804600	Active TSS	Lung	lung
33	chr10:97802800-97804600	Active TSS	Ovary	ovary
34	chr10:97802800-97804600	Active TSS	Pancreas	Pancrea
35	chr10:97802800-97804800	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr10:97802800-97804800	Active TSS	Fetal Intestine Small	intestine
37	chr10:97802800-97804800	Active TSS	Small Intestine	intestine
38	chr10:97802800-97805000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:97802800-97805000	Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr10:97802800-97805000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:97802800-97805000	Active TSS	Fetal Muscle Trunk	muscle
42	chr10:97802800-97805000	Active TSS	Hela-S3	cervix
43	chr10:97802800-97805200	Active TSS	H9 Cell Line	embryonic stem cell
44	chr10:97802800-97805200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:97802800-97805200	Active TSS	NHLF	lung
46	chr10:97803000-97804000	Active TSS	Primary B cells from peripheral blood	blood
47	chr10:97803000-97804000	Active TSS	Fetal Thymus	thymus
48	chr10:97803000-97804000	Active TSS	Stomach Smooth Muscle	stomach
49	chr10:97803000-97804200	Active TSS	Primary T cells from cord blood	blood
50	chr10:97803000-97804200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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