Variant report

Variant	rs1047370
Chromosome Location	chr10:97820339-97820340
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97802687..97804899-chr10:97818993..97822315,3	K562	blood:
2	chr10:97812701..97816784-chr10:97818025..97820813,5	K562	blood:
3	chr10:97809982..97812062-chr10:97817985..97822166,3	K562	blood:
4	chr10:97806581..97808939-chr10:97818665..97821004,2	K562	blood:

Variant related genes	Relation type
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10458746	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs10509699	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs10509703	0.82[CEU][hapmap]
rs10786261	0.90[CEU][hapmap]
rs10786262	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882714	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882716	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882717	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882718	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882728	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs11188566	0.82[ASN][1000 genomes]
rs11188572	0.85[ASN][1000 genomes]
rs11188575	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188578	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11188579	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188580	0.88[ASN][1000 genomes]
rs11188581	0.86[ASN][1000 genomes]
rs11188582	0.90[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs11188583	0.86[ASN][1000 genomes]
rs11188593	0.86[ASN][1000 genomes]
rs11188594	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188595	0.90[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs11188596	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188598	0.85[ASN][1000 genomes]
rs11188599	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11188601	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188603	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11188604	0.81[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188606	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188608	0.84[ASN][1000 genomes]
rs11188613	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188615	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11188616	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11188618	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188623	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11188626	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188627	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188635	0.81[CEU][hapmap]
rs11188639	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11188656	0.81[CEU][hapmap]
rs11188657	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11597197	0.80[EUR][1000 genomes]
rs11814327	0.81[CEU][hapmap]
rs12219508	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs12221239	0.85[ASN][1000 genomes]
rs12354762	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12359842	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12414081	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12569991	0.86[ASN][1000 genomes]
rs12570955	0.83[ASN][1000 genomes]
rs12572217	0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1336455	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111275	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1889921	0.86[ASN][1000 genomes]
rs1974251	0.82[ASN][1000 genomes]
rs2039616	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2085492	0.84[ASN][1000 genomes]
rs3814226	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3961944	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4145226	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs61858613	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs713070	0.81[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72474879	0.85[ASN][1000 genomes]
rs7913418	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs915506	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825529	chr10:97820146-97820600	Strong transcription Weak transcription	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
2	chr10:97804800-97824200	Weak transcription	Small Intestine	intestine
3	chr10:97805000-97825600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:97805400-97822800	Weak transcription	Hela-S3	cervix
5	chr10:97805800-97822600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:97806200-97822200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:97806200-97822400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:97806600-97821200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:97806800-97822600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:97807000-97822400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:97807000-97823000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:97809000-97822800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:97812800-97822400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:97814400-97823200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:97814600-97822400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:97814600-97822600	Strong transcription	Fetal Thymus	thymus
17	chr10:97814600-97823200	Strong transcription	Dnd41	blood
18	chr10:97814800-97822400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:97815000-97821600	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:97815200-97822400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:97815600-97822600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:97816000-97820400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:97816000-97821000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr10:97816000-97822800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:97816200-97820400	Strong transcription	Primary B cells from cord blood	blood
26	chr10:97816200-97820600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:97816200-97821200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:97816200-97821200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:97816200-97821800	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr10:97816200-97822400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:97816200-97822400	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr10:97816200-97822600	Strong transcription	Duodenum Mucosa	Duodenum
33	chr10:97816400-97831400	Weak transcription	Right Atrium	heart
34	chr10:97816600-97821000	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr10:97816600-97821400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:97816600-97822000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:97816600-97822200	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr10:97816600-97822200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:97816600-97822200	Strong transcription	GM12878-XiMat	blood
40	chr10:97816600-97822400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:97816600-97822600	Strong transcription	Primary hematopoietic stem cells	blood
42	chr10:97816600-97822600	Strong transcription	HSMM	muscle
43	chr10:97816600-97822800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr10:97816600-97823800	Strong transcription	Fetal Brain Female	brain
45	chr10:97817800-97823000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr10:97818000-97821200	Weak transcription	Aorta	Aorta
47	chr10:97818000-97821200	Weak transcription	Fetal Intestine Small	intestine
48	chr10:97818000-97821200	Weak transcription	Fetal Stomach	stomach
49	chr10:97818000-97822200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr10:97818000-97822600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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