Variant report

Variant	rs12569991
Chromosome Location	chr10:97852070-97852071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
2	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
3	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
4	chr10:97848458..97851464-chr10:97851557..97854751,6	MCF-7	breast:
5	chr10:97803257..97805604-chr10:97849531..97852092,3	MCF-7	breast:
6	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
7	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10458746	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1047370	0.86[ASN][1000 genomes]
rs10509699	0.90[ASN][1000 genomes]
rs10786262	0.86[ASN][1000 genomes]
rs10882703	0.86[EUR][1000 genomes]
rs10882714	0.87[ASN][1000 genomes]
rs10882716	0.90[ASN][1000 genomes]
rs10882717	0.90[ASN][1000 genomes]
rs11188549	0.86[EUR][1000 genomes]
rs11188550	0.86[EUR][1000 genomes]
rs11188554	1.00[EUR][1000 genomes]
rs11188557	1.00[EUR][1000 genomes]
rs11188566	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188572	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188578	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188580	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188581	0.94[ASN][1000 genomes]
rs11188582	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188594	0.88[ASN][1000 genomes]
rs11188595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188603	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188608	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188615	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188616	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188623	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188639	0.90[ASN][1000 genomes]
rs11814171	1.00[EUR][1000 genomes]
rs12219508	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12221239	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12414081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570955	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572217	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1336455	0.90[ASN][1000 genomes]
rs17111275	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1974251	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2085492	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3814226	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4145226	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72474879	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898901	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7913418	0.84[ASN][1000 genomes]
rs915506	0.84[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97850600-97852200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:97850600-97852600	Enhancers	HepG2	liver
3	chr10:97850800-97852200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links