Variant report

Variant	rs11188583
Chromosome Location	chr10:97834730-97834731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97831211..97833750-chr10:97833757..97836431,3	MCF-7	breast:
2	chr10:97833877..97835532-chr10:97836303..97838930,2	MCF-7	breast:
3	chr10:97829295..97831486-chr10:97834692..97836435,2	K562	blood:
4	chr10:97831034..97837353-chr10:97838908..97844842,8	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10458746	0.89[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1047370	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10509699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10786262	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10882703	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10882714	0.87[ASN][1000 genomes]
rs10882716	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10882717	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11188549	0.86[EUR][1000 genomes]
rs11188550	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11188554	1.00[EUR][1000 genomes]
rs11188557	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11188566	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188572	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188580	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188581	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11188582	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188594	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11188595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188598	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188615	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188623	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188639	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11188657	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes]
rs11814171	1.00[EUR][1000 genomes]
rs12219508	1.00[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12221239	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12414081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572217	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1336455	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17111275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1974251	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2085492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3814226	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4145226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72474879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898901	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7913418	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs915506	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
2	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
3	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
4	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
5	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
6	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
8	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:97819600-97848000	Weak transcription	HepG2	liver
12	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:97819600-97849400	Weak transcription	Ovary	ovary
16	chr10:97819800-97841400	Weak transcription	Liver	Liver
17	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
21	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:97822400-97840200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:97822600-97841800	Weak transcription	Adipose Nuclei	Adipose
27	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
29	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach
32	chr10:97823000-97849200	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr10:97823200-97849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:97823200-97849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:97823800-97849000	Weak transcription	Fetal Brain Female	brain
36	chr10:97825800-97848200	Weak transcription	Fetal Intestine Small	intestine
37	chr10:97831200-97836200	Enhancers	K562	blood
38	chr10:97831400-97834800	Enhancers	HUVEC	blood vessel
39	chr10:97832000-97835400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:97832800-97834800	Enhancers	Thymus	Thymus
41	chr10:97833800-97834800	Enhancers	Dnd41	blood
42	chr10:97833800-97835200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:97833800-97841400	Weak transcription	Primary T cells from cord blood	blood
44	chr10:97833800-97849000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:97834000-97835600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:97834000-97849000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:97834000-97849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:97834200-97834800	Enhancers	Placenta Amnion	Placenta Amnion
49	chr10:97834400-97836400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:97834600-97834800	Enhancers	Hela-S3	cervix

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