Variant report
| Variant | rs11188549 |
|---|---|
| Chromosome Location | chr10:97756593-97756594 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10458746 | 0.86[EUR][1000 genomes] |
| rs10786254 | 1.00[ASN][1000 genomes] |
| rs10882703 | 1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10882706 | 1.00[ASN][1000 genomes] |
| rs11188544 | 0.81[ASN][1000 genomes] |
| rs11188550 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11188554 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11188557 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11188566 | 0.86[EUR][1000 genomes] |
| rs11188572 | 0.86[EUR][1000 genomes] |
| rs11188578 | 0.86[EUR][1000 genomes] |
| rs11188580 | 0.86[EUR][1000 genomes] |
| rs11188582 | 0.86[EUR][1000 genomes] |
| rs11188583 | 0.86[EUR][1000 genomes] |
| rs11188593 | 0.86[EUR][1000 genomes] |
| rs11188595 | 0.86[EUR][1000 genomes] |
| rs11188598 | 0.86[EUR][1000 genomes] |
| rs11188599 | 0.86[EUR][1000 genomes] |
| rs11188603 | 0.86[EUR][1000 genomes] |
| rs11188608 | 0.86[EUR][1000 genomes] |
| rs11188616 | 0.86[EUR][1000 genomes] |
| rs11188623 | 0.86[EUR][1000 genomes] |
| rs11814171 | 0.86[EUR][1000 genomes] |
| rs12219508 | 0.86[EUR][1000 genomes] |
| rs12221239 | 0.86[EUR][1000 genomes] |
| rs12255122 | 1.00[ASN][1000 genomes] |
| rs12414081 | 0.86[EUR][1000 genomes] |
| rs12414410 | 1.00[ASN][1000 genomes] |
| rs12569991 | 0.86[EUR][1000 genomes] |
| rs12570955 | 0.86[EUR][1000 genomes] |
| rs12572217 | 0.86[EUR][1000 genomes] |
| rs17111275 | 0.86[EUR][1000 genomes] |
| rs1974251 | 0.86[EUR][1000 genomes] |
| rs2085492 | 0.86[EUR][1000 genomes] |
| rs3814226 | 0.86[EUR][1000 genomes] |
| rs4145226 | 0.86[EUR][1000 genomes] |
| rs72474879 | 0.86[EUR][1000 genomes] |
| rs7898901 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948147 | chr10:97755109-97761062 | Enhancers Weak transcription | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:97755800-97765000 | Weak transcription | Ovary | ovary |
